SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6042

Length: 837 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6042

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6659	26/27

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome b561 n=4 Tax=Andropogoneae RepID=B6TAB6_MAIZE	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	cytochrome b561	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome b561/ferric reductase transmembrane	IPR006593	-	0.0	-
Sma3	Cytochrome b561, eukaryote	IPR004877	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
440	25			75	1.0
441	87	12			0.992554
447		16	16		0.988813
448		83		16	0.994512
455		16	83		0.994512
457			83	16	0.994512
463	20			80	0.995493
539	12	87			0.992554
540	12		87		0.992554
541			87	12	0.992554
543			87	12	0.992554
552		12		87	0.992554
555		87		12	0.992554
596		14	85		0.993533
597	14	85			0.993533
605	16	83			0.994512
648	40			60	1.0
649		40		60	1.0
651			60	40	1.0
663	33		66		0.997452
666	66			33	0.997452
804		20	80		0.995493
807			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain