SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6037

Length: 1116 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6037

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22430	14/17
SustainPine v2.0	sp_v2.0_unigene25022	3/17

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB89322.1\| putative protein [Arabidopsis thaliana] gb\|AAP37696.1\| At5g15120 [Arabidopsis thaliana] dbj\|BAF00293.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED92119.1\| uncharacterized protein [Arab	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	2-aminoethanethiol dioxygenase-like	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	HGWP repeat	IPR005213	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Cysteamine dioxygenase	IPR012864	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Y5

Fln msg: atg_distance in limit (1-15): atg_distance = 2, Unexpected STOP codon in 5 prime region,

Fln protein: AFLASPLSVLNLFSDSEESPMPSAVQNLYEVCNETFFSSTVPVPPQRAIQRLRSVLDTVKPVDVGLNEDIFENDHGYGFFGPSLWRGRQSKIVAQWAAPVTYLHLYECNRFSIGIFCLPASAVIPFHDHPGMTVLSKLLFGSMYIKAYDWVDPINTETNLRLARLKVDSVFTSPCDTSVLYPTSGGNIHSFRAVTSCAVLDVLGPPYSDTEGRNCTYYREYPYSSLPDDGNTIPDDDDQGCAWLEEIEKPEDFIVRGATYKGPQIEA*

Protein Length: 269

Fln nts: AATGTAGGCCTTTCTTGCATCTCCCCTCTCGGTTCTTAATCTCTTCTCAGACTCTGAAGAATCCCCGATGCCGAGCGCGGTGCAAAACTTGTATGAAGTATGCAACGAGACTTTCTTCTCCTCCACTGTGCCTGTGCCTCCACAGCGAGCTATTCAGAGGTTGCGTTCTGTGTTAGATACTGTCAAGCCAGTAGATGTTGGGCTTAATGAAGATATATTTGAGAATGATCATGGCTATGGTTTCTTTGGACCAAGTTTGTGGAGGGGCCGTCAGTCAAAGATTGTGGCCCAATGGGCAGCACCTGTCACATACTTGCACCTTTACGAGTGTAATAGATTTTCGATAGGTATATTTTGTCTGCCAGCATCAGCGGTTATTCCTTTTCACGATCATCCTGGAATGACAGTTCTTAGCAAGCTTCTTTTTGGATCTATGTACATCAAAGCTTATGATTGGGTTGACCCCATCAATACAGAAACAAATTTGAGGCTAGCAAGGTTGAAGGTTGATAGCGTTTTTACATCTCCTTGTGACACATCTGTGTTGTATCCAACATCGGGAGGCAATATACATTCATTCCGAGCAGTTACATCTTGTGCAGTGCTTGATGTCCTTGGTCCTCCATATTCAGATACAGAGGGAAGGAATTGCACTTACTATCGTGAATACCCATACTCAAGTCTTCCTGATGATGGAAATACAATACCTGATGATGATGATCAAGGTTGTGCATGGTTGGAGGAGATAGAAAAGCCAGAAGACTTTATCGTCAGGGGAGCAACATATAAAGGTCCACAAATTGAAGCTTGA___TAAGTTGTGCTTGTGGCCATTCTCTATTACTGGAAAGATTATTCTCGTTTCTCATGCCTAATCTGACCACTTTAGTCGCTGTAAATACTACGTCTGAAAGGTACAAACATCATTAACTACTTTGGTCAAGTTCACATTCTGCAGACTATAGAATTTGTAAGCTGAAATTGATTGACACAATAGTGTGATAATTTAATAATGGATTGTATAATTTAAACCTCGTTAATGTTACGTAATCTGAAGTGAACTGTTGCAAATAGGGGCGCAGCAATTTTGGTTGAAAATTCAAAGTGCAGTATGACATT

Fln Alignment:

Contig6037___AFLASPLSVLNLFSDSEESPMPSAVQNLYEVCNETFFSSTVPVPPQRAIQRLRSVLDTVKPVDVGLNEDIFENDHGYGFFGPSLWRGRQSKIVAQWAAPVTYLHLYECNRFSIGIFCLPASAVIPFHDHPGMTVLSKLLFGSMYIKAYDWVDPINTETN-----LRLARLKVDSVFTSPCDTSVLYPTSGGNIHSFRAVTSCAVLDVLGPPYSDTEGRNCTYYREYPYSSLPXXXXXXXXXXXQGCAWLEEIEKPEDFIVRGATYKGPQIEA
D5A9Y5_________________AFLAALLPVLGLFSDTEEFPMPSAVQNLYEVCNETFSSSAVPVPPQRAIQRLRSVLDTIKPVDVGLNEDVFENDHGYGFFGPSLWRGRHSRIVARWAAPVTYLHLYECDRFSIGIFCLPASAVIPFHNHPGMTVLSKLLFGSMYIKAYDWVDPINTETNSNPSQLRLARLEVDNVFTSPCDTSVLYPTSGGNIHSFRAVTSCAVLDVLGPPYSDIEGRNCTYYSEYPYSSLPDDGNTIPDDDDQGCAWLEEIKRPDEFIVRGAPYKGPQIEA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
647			75	25	0.996473
661	20			80	0.995493
662	80			20	0.995493
691	25		75		0.996473
695			75	25	0.996473
932	50			50	1.0
936		60		40	1.0
1036	33			66	0.997452
1038	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
709	721	TGA TGA TGA TGA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain