SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6034

Length: 1396 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6034

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1176	27/29

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EREBP-3 homolog n=2 Tax=Stylosanthes hamata RepID=Q9ZR83_STYHA	-	-	2.0e-17	58%
FL-Next	sp=Ethylene-responsive transcription factor 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Blast2go	ethylene-responsive element binding factor-like protein	-	-	7.20587e-20	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	7.20587e-20	88%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	7.20587e-20	88%
Blast2go	DNA binding	GO:0003677	Molecular Function	7.20587e-20	88%
Blast2go	nucleus	GO:0005634	Cellular Component	7.20587e-20	88%

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Ubiquinol cytochrome reductase, transmembrane domain	IPR004192	-	-
Sma3	Rieske iron-sulphur protein, C-terminal	IPR005805	-	-
Sma3		IPR005806	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	IPR006317	-	-
Sma3	Rieske iron-sulphur protein	IPR014349	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LDE4

Fln msg:

Fln protein: MLTQPKVAPKDVGSAYKEVHFRGVRKRPWGRFAAEIRDPMKKTRVWLGTFDTAEEAARAYDSAARALRGPKAKTNFAFVPPCDDRSTSLSSTVESWSSPKNNTNNNTRKNLSLNKADGITHKIDLNIAQEEFGRKGSVPYLEDKILNISKKQKTFKRSCAPDRAVEAYNWSRQQYPQMGFDPNACHSDCDSSSSVVDDDEVGTSSLRPQGVRLLPDLNLPPCDDEEDFSSMLLHL*

Protein Length: 237

Fln nts: AATGTAATTGATGTATTTGCATAAATACTTGCAATAAATTGAAGGGCTTGATCGTCAGAACGCGGGGTTCTGCAGATTTGGTGAGTTGAAATAAATTGCCAAAGGTTGAAGATTGCAATAACCAGAGTGTTTTGATCCTGCCAGATTTATTATATTTGTTTATAAAATATCAAAAAGTTGAGGATTTTGAGTACTTGGCTGTTGCATTGCTGATTGGTTTTGAAGAAACCAGATAGATCGAAGCTATTTTTTTTGAAAGATCTATTCTTTAAGA_-_ATGTTGACACAGCCAAAGGTGGCGCCGAAAGATGTTGGATCTGCATACAAAGAAGTCCATTTCAGAGGTGTCAGAAAGAGGCCATGGGGAAGGTTTGCTGCAGAAATCAGAGATCCAATGAAGAAAACCCGTGTATGGCTCGGGACATTTGACACAGCAGAGGAAGCAGCCAGAGCATATGATAGTGCAGCCAGAGCACTCAGAGGACCCAAGGCAAAAACTAATTTTGCGTTTGTTCCTCCCTGTGATGATAGGAGTACTAGTCTTAGCAGCACTGTAGAGTCTTGGAGCAGTCCCAAGAATAACACTAATAATAATACAAGGAAAAACCTATCCTTGAATAAAGCAGATGGCATAACACATAAGATTGATCTGAACATTGCCCAAGAGGAGTTTGGCAGGAAAGGTTCTGTACCATATTTAGAAGATAAGATCCTCAATATATCAAAGAAACAGAAAACCTTCAAAAGGAGCTGTGCACCAGACAGGGCCGTGGAGGCCTACAATTGGTCCAGACAGCAGTATCCACAAATGGGTTTTGACCCAAATGCCTGTCATAGTGATTGTGATTCATCTTCATCTGTTGTTGATGATGATGAAGTGGGTACTTCTAGCTTGAGGCCTCAGGGAGTCAGGTTATTACCAGATTTGAATCTGCCACCTTGCGATGACGAAGAGGATTTCAGCAGCATGTTATTGCATCTTTGA___ATGCGCTCTCTTTTTAGTGCCCTGCAAAGGCCACGGGTATTATTGCCAATCCAATGAGGTCCCTATTTTCTTCTCTCTGCCATTGAATCAACCATTTTTGACTTCAGTGCATAGGTATAGCAAGCATTAGTTCTTTGTAATCCTGGCCTTGATATGAAGGAACTTATCTGCTATATTTTACTAGATTTAAATTCATTATTATTGTTCGTATTGGCATTGGGGACTGCATGAAATACACAAGGGCAGTTATTCCTATTTTCTGAGCTAACAACAGTGTAGGAATAACAATGATCAATTTACAGGCTCCGGGAGGGTTGGGACACCGGCTAATATATGATCATCATTGCTGACATTTTGTGTTTATATTTGACAATGTAATCCCGAAAAAGAGTTTAAGCAGTAACTTCTATTTGG

Fln Alignment:

Contig6034___PKDVGSAYKEVHFRGVRKRPWGRFAAEIRDPMKKTRVWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNF
Q9LDE4_________________PVTAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNF

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
252	33			66	0.997452
253	33			66	0.997452
255			33	66	0.997452
333	33	66			0.997452
506		83		16	0.994512
534		16		83	0.994512
536		83		16	0.994512
545	14		85		0.993533
546		85		14	0.993533
547	85		14		0.993533
548			85	14	0.993533
584		85		14	0.993533
660		83	16		0.994512
665	14			14	0.984337
667			85	14	0.993533
669	85			14	0.993533
676	12	87			0.992554
713	14	85			0.993533
715		85		14	0.993533
739	25	75			0.996473
983	33			66	0.997452
984		33	66		0.997452
986	66			33	0.997452
1146		20	80		0.995493
1257	75			25	0.996473
1258		75		25	0.996473
1260		33	66		0.997452
1261	33			66	0.997452
1262			66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
862	873	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain