SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6022

Length: 1635 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6022 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9117	27/27

Source	Descriptions	Term	Type	Identity
AutoFact	DNAJ homologue [Oryza sativa]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	80%
Blast2go	response to heat	GO:0009408	Biological Process	80%
Blast2go	metal ion binding	GO:0046872	Molecular Function	80%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	80%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Chaperone DnaJ	IPR012724	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKL7

Fln msg: your sequence is shorter than subject: 390 - 449

Fln protein: AKESVNSIFDPSLYHRCSQQRGHRLVVRAESDYYSILGVSRNASKSEIKSAYRKLARQFHPDVNKEAGAEKKFKEISNAYEVLSDDEKRPIYDKYGEAGLKGVGAGTGDFSNPFDIFESLFEGMGGMGGMGGSRGSRNRPMQGDDERYNLVLNFKEAVFGTDKEIEVTRLENCGTCDGSGVKPGTVPTSCSTCGGQGQVITAARTPLGDFRQVSTCQVCGGTGESSTPCSSCRGDGRVRRTKRISLKVPAGVDSGSRLRVRSEGNAGRRGGPP*YLYVFIEVLSDPVLKRDGSNILITCKVSYVDAILGTNVKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPLLGKPNSRGDELVRVQVEIPKRLSNEERKLIEELASLNKVKATSSR*

Protein Length: 391

Fln nts: GCAAAAGAATCTGTCAACTCAATATTTGATCCTAGCTTATATCATCGGTGTTCTCAACAAAGAGGACATAGACTGGTTGTCAGGGCAGAATCGGACTACTATAGTATTCTTGGAGTGTCGCGGAATGCCAGTAAATCAGAAATAAAAAGTGCTTATCGAAAACTTGCAAGACAATTTCATCCAGATGTAAACAAAGAAGCTGGCGCAGAGAAGAAATTCAAGGAAATCAGTAATGCCTATGAGGTTCTGTCGGATGATGAAAAACGCCCCATATATGACAAATATGGCGAAGCTGGACTTAAGGGTGTTGGTGCAGGCACTGGGGACTTTAGCAATCCATTTGATATTTTTGAATCTTTATTTGAAGGAATGGGAGGTATGGGAGGTATGGGTGGCAGTAGAGGATCTCGAAACAGACCAATGCAGGGAGATGATGAGAGGTACAATTTGGTTCTCAATTTTAAGGAGGCAGTTTTTGGGACAGATAAAGAGATAGAAGTCACTCGCCTTGAGAACTGTGGCACTTGTGATGGATCTGGTGTGAAACCAGGAACTGTGCCAACTAGCTGTAGTACATGTGGAGGTCAAGGGCAGGTCATTACAGCAGCACGGACACCATTGGGTGATTTCCGACAAGTTTCAACATGCCAGGTTTGTGGTGGCACAGGTGAAAGCTCAACACCGTGCAGTTCGTGTAGGGGGGATGGACGGGTGAGACGCACAAAAAGAATCAGTTTGAAAGTTCCTGCTGGTGTGGATTCAGGAAGTCGTCTTCGGGTTCGATCTGAAGGAAATGCAGGAAGAAGAGGTGGCCCTCCATGATATCTGTATGTATTTATTGAAGTACTTTCCGACCCTGTGTTGAAGCGTGATGGGTCAAATATACTCATAACATGCAAGGTTTCTTACGTTGATGCTATTCTTGGGACAAATGTTAAGGTGCCAACAGTAGATGGTATGGTTGATCTTAAAATACCCGCTGGAACACAACCTAACACAACACTGGTGATGGCCAAAAAGGGTGTTCCATTGCTTGGGAAGCCAAATTCACGAGGGGATGAATTGGTCCGGGTCCAGGTGGAAATTCCCAAACGTCTTAGTAACGAGGAAAGAAAGTTAATTGAAGAGCTAGCTAGCCTGAACAAAGTTAAAGCGACAAGCAGCAGATGA___TTAATCAGTACTAGAATTGAAATGTTATTTGCAAAGAATAAGCAATTGTTTTGTTTTAATAGTTGGTTCAACCAGCAAAATATGTATACTTTAGAGGTTTGAAAATCCGTTCTTCAAAATTGTGCAGCTTCATGTGCTTCACTTTCCCTAGAAGGTGCATCAGATATGACCCCTCTTGTGAAAGCTGTGATTGCTGAGTGAGCCTGAATTATATTACTTGGGAGTTCATAGCCTGTTTGATAGTTTATGAGAAGACACCATTAGAGTAGCTTAAATAGAACACACATTTATTCATTTGAGTCACAACTTCTTTGTAGTATACTTAGTGTGGCTGGACTTTGAAGGTTGCCATTGAGGGCAGCTATTTTGCTATGTTAATGTGTTTAACGGTTGAATACCCTTTATAACACAACTTCAGTGATGGTAAAATAGGGTGTTTTATTACTTGGGAAGCCAAATTACATT

Fln Alignment:

Contig6022___AKESVNSIFDPSLYHRCSQQRGHRLVVRAESDYYSILGVSRNASKSEIKSAYRKLARQFHPDVNKEAGAEKKFKEISNAYEVLSDDEKRPIYDKYGEAGLKGVGAGTGDFSNPFDIFESLFEXXXXXXXXXXXXXXRNRPMQGDDERYNLVLNFKEAVFGTDKEIEVTRLENCGTCDGSGVKPGTVPTSCSTCGGQGQVITAARTPLGDFRQVSTCQVCGGTGESSTPCSSCRGDGRVRRTKRISLKVPAGVDSGSRLRVRSEGNAGRRGGPP*YLYVFIEVLSDPVLKRDGSNILITCKVSYVDAILGTNVKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPLLGKPNSRGDELVRVQVEIPKRLSNEERKLIEELASLNKVKATSSR
B8LKL7_________________AKESVHSIFDPSLYHRCSQQRGHRLVVRAESDYYSILGVSRNASKSEIKSAYRKLARQYHPDVNKESGAEKKFKEISNAYEVLSDDEKRPIYDKYGEAGLKGVGAGTGDFSNPFDIFESLFEGMGGMGGMGGTRGSRNRPMQGDDERYNLVLNFKDAVFGTDKEIEVTRLENCSTCDGSGVKPGTVPTSCSTCGGQGQVITAARTPLGDFRQVSTCQVCGGTGESSTPCSSCRGDGRVRRTKRISLKVPAGVDSGSRLRVRSEGNAGRRGGPPGDLYVFIEVLSDPVLKRDGSNILITCKVSYIDAILGTNVKVPTVDGMVDLKIPPGTQPNTTLVMAKKGVPLLGKPNSRGDELVRVQVEIPKRLSNEEKKLIEELASLNKVKATSSR

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
184	75		25		0.996473
219	20			80	0.995493
220	20	80			0.995493
222		80	20		0.995493
223	80			20	0.995493
488	50	50			1.0
621		66		33	0.997452
823	50	25		25	0.995533
826	50	50			1.0
828			50	50	1.0
1072	20		80		0.995493
1073		20		80	0.995493
1075		80		20	0.995493
1369	50		50		1.0
1370	50			50	1.0
1371		50		50	1.0
1372	50		50		1.0
1465	20			80	0.995493
1466	20		80		0.995493
1467			80	20	0.995493
1468	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain