SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6015

Length: 905 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6015

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene771	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB83113.1\| putative protein [Arabidopsis thaliana] gb\|AAO41871.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50669.1\| unknown protein [Arabidopsis thaliana] gb\|AEE80373.1\| uncharacterized protein [Arab	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	calmodulin binding protein	-	-	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1645	IPR012442	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYX3

Fln msg: Overlapping hits, possible frame ERROR between 390 and 387, Distance to subject end: 91 aas, your sequence is shorter than subject: 286 - 374

Fln protein: METLRVVSAVGMVNNTSGSSSCGNMEGKGKFYYDYDSACSTPYVSAPSSPGRPGAGFFFSAPTSPMHPLASRRAEHNFLANTTADGIPMVEDDEASVSTGSDFEFSARFSELxxxNSMSTEPTMSSADELFCNGQIRPLKLSTHLQKPQFLGPLIDFEDEEEESKAGSSFAVAEPVGERGRDRLCRDKSHHRRTRSLSPLRSSAQWVEEEHSKLEDEEAGDADEKSKNIASSSASSSSSTKRRGSKRWSLKDLLLYRSKSEGRDHTRERHWALSFVSPAKQSSEKP

Protein Length: 287

Fln nts: AATGTAGCTGGGTTGTGCTCTTTTGTTTCAAGCAGTTAGGAACAAGCA_-_ATGGAGACGTTAAGGGTCGTTTCAGCAGTGGGGATGGTGAACAACACAAGCGGTAGCAGCAGCTGCGGCAATATGGAGGGGAAGGGGAAGTTTTATTATGACTATGATAGTGCTTGTTCTACCCCTTATGTAAGCGCTCCTTCCAGCCCTGGAAGACCTGGAGCTGGTTTTTTCTTCAGTGCACCCACCAGTCCTATGCATCCTCTGGCTTCACGCCGTGCCGAGCACAATTTTCTGGCCAACACCACTGCTGATGGGATCCCCATGGTGGAAGATGACGAGGCCTCTGTTTCGACTGGCTCGGATTTCGAGTTCAGTGCGCGATTTTCAGAGCTCxxxxxxxxxAATTCCATGTCGACTGAGCCCACCATGTCTTCGGCGGATGAGCTTTTCTGTAATGGCCAGATTCGGCCATTGAAGCTCTCGACGCATCTGCAGAAGCCACAGTTTTTGGGACCGCTCATAGATTTTGAGGATGAAGAAGAGGAAAGTAAGGCCGGATCCAGTTTTGCAGTCGCAGAGCCTGTTGGTGAAAGGGGCCGAGACCGTTTGTGTCGGGACAAATCTCACCATCGCAGAACCAGATCACTGTCGCCACTCAGAAGCTCGGCTCAATGGGTAGAAGAAGAGCATTCCAAATTAGAAGATGAAGAAGCAGGGGACGCGGATGAGAAGTCCAAGAACATTGCCTCTTCTTCTGCCTCGTCCTCGAGCTCCACAAAGCGAAGAGGTTCAAAGCGCTGGAGTCTGAAAGATCTGCTCCTGTACAGAAGCAAAAGCGAGGGCAGAGACCACACCAGAGAGCGACACTGGGCTTTATCCTTCGTTAGCCCTGCAAAACAATCCTCAGAGAAACCG

Fln Alignment:

Contig6015___METLRVVSAVGMVNNTSGSSSCGNMEGKGKFYYDYDSACSTPYVSAPSSPGRP-GAGFFFSAPTSPMHPLASRRAEHNFLANTTADGIPMVEDDEASVSTGSDFEFSARFSELExANSMSTEPTMSSADELFCNGQIRPLKLSTHLQKPQFLGPLIDFEDEEEESKAGSSFAVAEPVGERGRDRLCRDKXXXXXXXXXXXXXXXAQWVEEEHSKLEDEEAGDADEKSKNI-XXXXXXXXXXTKRRGSKRWSLKDLLLYRSKSEGRDHTRERHWALSFVSPAKQSSEK
A9NYX3_________________METLRVVSAVGMVSNTSSS----NTDGNGKFYYDYDSACSTPYVSAPSSPGRPGGGGFFFSAPTSPMHPLVSCRVDHNFM-STTAAGIPKAEDDEASVSTGSDFEFSARFSELDxADSVATEPTMSSADELFCNGQIRPLKLSTHLQKPQLLGPLIDFEDDEEENKAGSSFAAPEAVGERGRDRLCRDKSRHRRTRSLSPLRSSAQWVEEEPSKLEDEEGGDADDKSKNIASISSSSSSSSTKRRGSKRWSLKDLLLYRSKSEGRGHTRERHWALSFSSPAKQSSEK

SNPs (tot: 3)

Position	A %	G %	T %	Probability
669		80	20	0.995493
732	80		20	0.995493
733		80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain