SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6003

Length: 1113 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6003

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3813	31/32

Source	Descriptions	Term	Type	Identity
AutoFact	COP9 signalosome complex subunit 1 [Arabidopsis thaliana] sp\|P45432.2\|CSN1_ARATH RecName: Full=COP9 signalosome complex subunit 1; Short=CSN complex subunit 1; AltName: Full=Constitutive photomorphogenesis protein 11; AltName: Full=Protein FUSCA 6 gb\|AAK2	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	fusca protein fus6	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	protein complex assembly	GO:0006461	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	response to absence of light	GO:0009646	Biological Process	87%
Blast2go	hyperosmotic response	GO:0006972	Biological Process	87%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	87%
Blast2go	response to salt stress	GO:0009651	Biological Process	87%
Blast2go	cullin deneddylation	GO:0010388	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	signalosome	GO:0008180	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC30

Fln msg: your sequence is shorter than subject: 364 - 433

Fln protein: MNVTQLFKEVAHKIGGKLGSDYSLDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTPDVQDQPVVVAKLKCAAGLAHLESKKYKLAARKFVETNFDLGNNYTEVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLRTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMRHDFISRSSRRM*

Protein Length: 365

Fln nts: AATGAATGTCACTCAACTCTTCAAAGAGGTCGCCCACAAGATCGGTGGGAAGTTGGGTTCTGATTACTCCCTCGACCAAGACTGGATTGACTCAGTCGAACGCCGGGCTGAACAGCGCAAAGACAAGCTCGAGAATGAGCTAAATGGCTACAAGACAAATCTAATAAAGGAAAGCATTCGAATGGGATACAATGATTTCGGGGACTTCTACTATGCACATGGGTTGCTTGCAGACGCCTTCAAGAATTATGTCCGAACGCGTGACTACTGCACCACTTCGAAGCACATTATCCAAATGTGTTTGAATGTGATTCTGGTCAGCATTGAGATGGGTCAATTCATGCACGTTTCCAGTTATGTGACCAAGGCTGAACAAACCCCTGATGTCCAGGATCAACCTGTTGTGGTTGCCAAGCTAAAATGTGCTGCAGGTCTAGCTCACCTCGAAAGCAAGAAATACAAGCTAGCTGCTCGCAAGTTTGTTGAGACAAACTTTGACCTAGGGAACAACTATACAGAAGTTATTGCTCCGCAGGATGTTGCAACTTATGGAGGACTTTGTGCACTTGCGTCCTTTGATAGATCAGAACTTAAGAATAAAGTTATAGACAATATCAATTTTCGAAATTTCTTGGAACTAGTGCCTGAAGTAAGGGAACTTATTCATGACTTCTATGCAAGCCGATATGCTTCATGCATAGAGTATCTGCAGAATCTCAAGGCAAACCTACTGCTTGATATACATCTACATGATCACGTGGAAACACTGTATGATCAGATTCGGCACAAAGCCCTTATCCAGTATACAACTCCTTTCATATCTGTTGATCTTCGTACGATGGCAAATGCATTCATGACAAATGTGGCTGGGCTTGAAAAGGAGCTTGAAGCTTTGATTATGGATAATCAAATTCAGGCACGCATCGATTCACATAACAAGATCTTATATGCTCGCCATGCTGATCAACGTAATACAACATTTCAGCGGGTTCTCCAGACTGGGGTGGAATTTGATAGGGATGCACGAGCAATGATGTTGCGGGCCAATATCATGAGGCATGATTTTATCTCAAGATCATCCAGGAGGATGTGA___CTTGGCATGATTATTACATT

Fln Alignment:

Contig6003___TQLFKEVAHKIGGKLGSDYSLDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTXXXXXXXXXXAKLKCAAGLAHLESKKYKLAARKFVETNFDLGNNYTEVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLRTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMRHDFISRSSRRM
D5AC30_________________TQLFKEVTHKIGGKLGSDYALDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTPDVQEQVVVVAKLKCAAGLAHLENKKYKLAARKFVETNFDLGNNYTDVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLHTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMRHDFISKSSRRM

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
5	66			33	0.997452
7		33		66	0.997452
8	33		66		0.997452
9	33			66	0.997452
349		20		20	0.99255
352	20		80		0.995493
468	75	25			0.996473
469	25		75		0.996473
470		75		25	0.996473
584		14	85		0.993533
587	85			14	0.993533
595	83	16			0.994512
596	16	83			0.994512
698	18			81	0.999994
702			81	18	0.999994
808			87	12	0.992554
948		14		85	0.993533
949	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain