SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6002

Length: 887 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6002 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17124	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	Signal recognition particle receptor subunit beta n=1 Tax=Cucumis melo subsp. melo RepID=E5GBI2_CUCME	-	-	71%
FL-Next	tr=Signal recognition particle receptor subunit beta; Cucumis melo subsp. melo.	-	-	74%
Blast2go	signal recognition particle receptor subunit beta	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Phox homologous domain	IPR001683	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Signal recognition particle receptor, beta subunit	IPR019009	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
83			75	25	0.996473
84			25	75	0.996473
195	33		66		0.997452
226	20		80		0.995493
228		80		20	0.995493
229		80	20		0.995493
535	25			75	0.996473
537		75		25	0.996473
538	75		25		0.996473
539	75	25			0.996473
540		75		25	0.996473
541	75		25		0.996473
542	75		25		0.996473
712		25	25		0.995533
713	25	75			0.996473
730	25	75			0.996473
731	25			75	0.996473
875		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain