SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5997

Length: 720 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5997

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7549	7/14
SustainPine v2.0	sp_v2.0_unigene27005	3/14
SustainPine v2.0	sp_v2.0_unigene28509	4/14

Source	Descriptions	Term	Type	Identity
AutoFact	Serine-type endopeptidase n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD4_CUCME	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	78%
Blast2go	prolyl oligopeptidase-like protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	84%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
215	25	75			0.996473
235	75			25	0.996473
290		66	16	16	0.988813
291	83		16		0.994512
292		83		16	0.994512
300		83	16		0.994512
302	83	16			0.994512
305		83	16		0.994512
306	50		50		1.0
332		16		83	0.994512
348	16		83		0.994512
357		83		16	0.994512
378		83		16	0.994512
387	16		83		0.994512
399	16		83		0.994512
402	16		83		0.994512
405	83			16	0.994512
422	50		50		1.0
424	25		75		0.996473
429		25	75		0.996473
431	85			14	0.993533
435		66		33	1.0
444		66		33	1.0
450	66	33			1.0
456	66			33	1.0
458		66	33		1.0
465		80		20	0.995493
471	80	20			0.995493
480	80	20			0.995493
486			80	20	0.995493
519		20	80		0.995493
520	20		80		0.995493
521		80		20	0.995493
522	80			20	0.995493
704	33		66		0.997452
706			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain