SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5990

Length: 1145 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5990

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15564	108/108

Source	Descriptions	Term	Type	Identity
AutoFact	Ferritin n=1 Tax=Picea sitchensis RepID=C0PRI0_PICSI	-	-	80%
FL-Next	sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	ferritin subunit precursor	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	0.0	80%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRI0

Fln msg:

Fln protein: MLLRAPAVVSPATDVSSPWKQQQHSCFKKGISADKCGVGLTATYMKSKSGAKHSVHTIRAVGGEGRTTSALTGVVFEPFAEVQTELVQVSQSFSQSLARQKFSDGCEGALNEQINVEYNVSYVYHALFAYFDRDNVALPGFAKYFKDASDEERGHAEKLMKYQNIRGGKVKLQSILLPAVMEFDNAEKGDALYAMELTLSLEKLTNQKLLNLHAVAQEANDGQMTDFIEGNFLTEQVEAIKKVSEYVSQLRRIGKGHAVWHFDQMLLNGDNVAHAGALAAV*

Protein Length: 283

Fln nts: CGGGATGCTGCATTCTTGTATTTGCATCAGTTGTTTACGCGTGTTTCTCACAATTTGGTTAGTGCCCGCCCCTTCTGAAAGTCCCCCAGGGATTAAAGTGTTTTTGGGCTTTCCTGTGATTGGGCGGATTCGGGTTTCAATCGATTGATTCAATCTGCAACC_-_ATGCTTCTCAGAGCTCCTGCCGTTGTTTCTCCTGCTACTGATGTCTCTTCTCCATGGAAGCAACAGCAACACAGCTGTTTCAAGAAAGGTATTTCAGCAGACAAATGCGGCGTCGGTCTGACTGCAACCTATATGAAGTCTAAGAGTGGGGCCAAGCATTCTGTTCATACCATTCGAGCTGTAGGCGGTGAAGGGAGGACCACAAGTGCTCTGACTGGAGTTGTATTTGAGCCTTTTGCTGAAGTCCAGACTGAGCTTGTGCAAGTTTCTCAATCATTCTCTCAGTCTTTGGCCAGACAGAAGTTCTCAGATGGTTGTGAAGGCGCATTGAATGAACAAATCAACGTGGAGTACAACGTTTCATATGTCTATCATGCTCTCTTTGCATACTTTGATAGGGACAACGTGGCTCTGCCAGGCTTTGCTAAGTACTTTAAGGATGCCAGTGACGAAGAGCGGGGTCATGCAGAAAAGCTCATGAAATATCAGAACATCAGAGGTGGGAAAGTTAAACTACAGTCCATTTTATTGCCTGCTGTCATGGAGTTTGACAACGCTGAGAAGGGTGATGCCCTTTATGCCATGGAGCTGACCTTGTCTTTGGAGAAACTGACAAACCAAAAGCTTTTGAACTTGCATGCTGTAGCCCAAGAGGCTAACGATGGTCAGATGACGGATTTCATCGAGGGCAATTTTCTCACCGAGCAGGTTGAAGCTATCAAGAAAGTATCAGAGTATGTGTCTCAGTTGAGAAGGATTGGGAAAGGCCACGCTGTATGGCATTTTGATCAGATGCTTCTCAACGGAGATAATGTCGCTCACGCAGGAGCTCTTGCTGCTGTTTGA___CCTGACTGAGAATTAGATTTTGAACCCTATCTTGATAACTGGAATAACATCGAGTCTTTTGAGATAAATTTTAGGTAGTACATGATCGCAATATATATAGATATATGTATATATCTATCTTAATATGAATTTACATT

Fln Alignment:

Contig5990___MLLRAPAVVSPATDVSSPWKQQQHSCFKKGISADKCGVGLTATYMKSKSGAKHSVHTIRAVGGEGRTTSALTGVVFEPFAEVQTELXXXXXXXXXXLARQKFSDGCEGALNEQINVEYNVSYVYHALFAYFDRDNVALPGFAKYFKDASDEERGHAEKLMKYQNIRGGKVKLQSILLPAVMEFDNAEKGDALYAMELTLSLEKLTNQKLLNLHAVAQEANDGQMTDFIEGNFLTEQVEAIKKVSEYVSQLRRIGKGHAVWHFDQMLLNGDNVAHAGALAA
C0PRI0_________________MLLRAPAIIFSATDASSPWKQQQHNGFKKGISSDKSGVGLVATYMKTKRGAKHSVHTVRAAGAEVKTTSALTGVVFEPFSEVQNELVLVSQSFSQSLARQKFSDSCEGALNEQINVEYNVSYIYHALFAYFDRDNVALPGFAKYFRDASDEERGHAEMFMKYQNVRGGKVKLQSILMPTIMEFDNSQKGEALYAMELALSLEKLTNQKLLNLHTVAQEANDGQMTDFIEGNFLTDQVQAIKKVSEYASQLRRIGQGHGVWHFDQMLLNGGDVAPAPGAGA

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
182	25		75		1.0
183	25	75			1.0
184		75		25	1.0
210		88		11	0.923564
339	20		80		0.995493
342		80		20	0.995493
561	95			4	0.995055
658	6			93	0.999364
661			93	6	0.999453
662	93			6	0.999453
665	11			88	1.0
666		12	84	4	1.0
667	12		87		1.0
668			86	13	1.0
669	86			13	1.0
683			88	11	0.999937
738	10	90			0.90298
819	14		85		0.993533
822	85			14	0.993533
920		12	87		0.992554
925	14		85		0.993533
926		14	85		0.993533
928	85			14	0.993533
929	85			14	0.993533
1094		10	90		0.90298
1096	11			77	0.968132
1097		75		12	0.975346
1098	28		71		1.0
1099	14			14	0.984337
1100		85		14	0.993533
1102	66			33	1.0
1138	33		66		0.997452
1139	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain