SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5986

Length: 871 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5986

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene535	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9S2Q1_RICCO	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	protein	-	-	55%

Source	InterPros	Term	Type	Identity
Sma3	VHS	IPR002014	-	-
Sma3	GAT	IPR004152	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Target of Myb protein 1	IPR014645	-	-
Sma3	VHS subgroup	IPR018205	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACU8

Fln msg: Distance to subject end: 115 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 281 - 394

Fln protein: MDLVEQCSFNKQQAMQLVVTTSDEELLCQALALNDDLQHVLGKHDAIASGSYVPTKEINVPAPSAVNISHEEDEAEDDVEQLFRRSSKVRAQYEGKASVSKKNHSTTQPPLIPQPPDVTKANSTIAKPMHIADLLSSDGDESPSSNTTDPRTEFSPVFPQATPNPFNRQSISQGISTRAEPYPSSSELGDQIHSHTNGISPSSYTTKAQQNGNKQHLQTQGQSIFANEDDKLARSSMAEQQSDLRYDLEPHDLKAPTHKIPGNFPPTPQHIDVPQIQNSHT

Protein Length: 282

Fln nts: AAGAGGGTGTGAAAGATGAAATAATT_-_ATGGATCTTGTTGAACAATGCTCTTTTAACAAGCAACAAGCAATGCAACTCGTCGTTACAACTTCTGATGAAGAGCTTCTTTGTCAGGCTCTTGCATTGAATGACGATCTACAACATGTTCTTGGTAAACATGATGCAATTGCTTCAGGATCATATGTCCCAACCAAGGAAATAAATGTTCCCGCACCTTCTGCGGTAAACATTAGCCATGAAGAAGATGAAGCAGAAGATGATGTAGAACAGCTATTTCGCCGGTCTTCAAAAGTCCGTGCACAATATGAAGGGAAGGCCAGTGTTAGCAAGAAAAACCATTCTACAACTCAACCACCACTGATTCCCCAACCACCAGATGTGACAAAGGCCAATAGTACTATTGCAAAGCCTATGCATATTGCAGATCTTCTCAGTAGTGATGGAGATGAGTCACCGTCTTCAAACACTACAGATCCTAGGACAGAATTCTCACCTGTTTTTCCACAGGCCACTCCAAATCCATTTAACAGACAGTCAATTTCTCAAGGGATCTCGACGAGAGCAGAACCATACCCATCGTCTTCTGAGTTGGGGGATCAAATTCACTCACATACAAATGGAATTTCGCCAAGTTCATACACCACCAAAGCTCAACAAAATGGAAATAAGCAACACTTGCAAACACAAGGACAAAGCATATTTGCAAATGAGGATGACAAGCTAGCAAGGAGTAGTATGGCAGAGCAGCAATCGGATCTGAGATATGATTTGGAACCACATGACTTGAAAGCACCGACACACAAAATTCCTGGCAACTTTCCACCCACCCCACAGCATATTGATGTTCCACAGATTCAAAATAGTCACACATT

Fln Alignment:

Contig5986___MQLVVTTSDEELLCQALALNDDLQHVLGKHDAIASGSYVPTKEINVPAPSAVNISHEEDEAEDDVEQLFRRSSKVRAQYEGKASVSKKNHSTTQPPLIPQPPDVTKANSTIAKPMHIADLLSSDGDESPSSNT----TDPRTEFSPVFP-----QATPNPFNRQSISQGISTRAEPYPSSSELGDQIHSHTNGISPSSYTTKAQQNGNKQHLQTQGQSI------FANEDDKLARSSMAEQQSDLRYDLEPHDLKAPTHKIPGNFPPTPQHIDVPQ
D5ACU8_________________MHLVNTTLDEELLCQGLTLNDDLQRVLGKHDAIVAGAPVTWEKTLAPPPSLVNVNNEEDETEDDLVQLSRRSSRVITQSQDKASGNVRNQPAAPLPLLPPPPGLKKVNTPSDKLEQTVDFLSGDAYESPTTATPPAASPPSGQYMQTSPGSISQQATPYPFNSQSSAQDVLITQPTYSSSQVL--QQPYHPNG--SNSLAISSTQQHEYQKFQPEGQELRVDNAGHALQWSNPAGQSHNPQQSILAHDAQSLNLNVPAQKSPGGLPPAPWDVQSPQ

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
417		20		80	0.995493
467	20	80			0.995493
468		20		80	0.995493
470		80		20	0.995493
471	80			20	0.995493
482	20	80			0.995493
483	80			20	0.995493
512		50		50	1.0
600	83	16			0.994512
651	20			80	0.995493
654	80			20	0.995493
655		80		20	0.995493
766	12		87		0.992554
781			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain