SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5985

Length: 899 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5985 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18224	22/23
SustainPine v2.0	sp_v2.0_unigene78963	1/23

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=1 Tax=Sequoia sempervirens RepID=E5FXB1_SEQSE	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	malate glyoxysomal	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	L-lactate/malate dehydrogenase	IPR001557	-	-
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, type 1	IPR010097	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
171	14			85	0.993533
173			85	14	0.993533
174	85		14		0.993533
175		85		14	0.993533
353		75		25	0.996473
354	66	33			0.997452
365	25		75		0.996473
367			25	75	0.996473
368		75		25	0.996473
602		16	83		0.994512
604	83			16	0.994512
655	14			85	0.993533
656		85		14	0.993533
659		85		14	0.993533
763	11		88		0.923564
766			88	11	0.923564
781	12		87		0.992554
782	87	12			0.992554
790			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain