SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5981

Length: 1274 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5981 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16115	39/39

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat resistance protein-like protein [Gossypium hirsutum]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	72%
Blast2go	leucine-rich repeat-containing protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7T9V3

Fln msg: Separated hits, possible frame ERROR between 194 and 196,

Fln protein: MTNTCNLPHFISIVIFLVLLMNVVNCKTLKRDVKALNEIKASLGWKVVYAWVGDDPCGDGDLSxxWSGVTCSHANQGEYRVVTELELYGVSIVGPFPVAVTSLLDLRRLDLHGNKLTGSIPPQIGRLKHLMILNLRWNKLQDSIPPEIGELKKLTNLYLSFNNLRGSIPKELGNLPELRYLYLHENRLTGRIPPELGILPNLRHLDVGNNHLVGTIRELIRMEGCFPSLRNLYLNNNYLTGGIPAQLANLTNLEILYLSDNKISGVVPPELASLPRLTYLYLDQNSLSGRIPDAFYQHPYLKEMYIEGNQFRPGVNPIGVHKILEVSDTEFLF*

Protein Length: 335

Fln nts: CA_-_ATGACGAATACCTGTAATCTACCACACTTCATCTCTATCGTCATCTTCCTCGTCCTGCTGATGAACGTTGTTAATTGCAAAACTCTCAAAAGAGATGTGAAAGCATTGAACGAGATCAAGGCATCTCTTGGATGGAAAGTGGTGTACGCATGGGTTGGAGATGATCCGTGTGGGGATGGAGACTTATCACCxxxTTGGAGTGGGGTTACTTGTTCTCATGCAAACCAAGGAGAGTACCGTGTTGTCACAGAATTGGAGCTTTATGGAGTGTCAATTGTTGGTCCTTTTCCAGTGGCAGTAACAAGTCTTCTGGACCTGAGAAGATTGGATCTTCATGGCAATAAGCTGACTGGTTCAATACCCCCTCAAATTGGGCGACTCAAGCATCTAATGATATTAAATTTACGGTGGAATAAGTTGCAAGATTCAATTCCACCTGAAATTGGAGAGCTGAAGAAACTCACAAATTTGTATCTGAGTTTCAACAACTTACGAGGATCAATTCCAAAAGAACTTGGGAATTTGCCAGAGCTTCGCTATCTCTACCTTCATGAAAATCGACTCACAGGACGAATTCCTCCAGAACTGGGAATTCTTCCCAACCTTCGTCACTTAGATGTTGGCAATAATCACCTGGTAGGGACTATAAGAGAGCTCATCCGTATGGAGGGTTGCTTTCCATCTCTTCGTAATTTGTATCTTAATAACAATTACTTGACAGGAGGAATTCCTGCACAGCTTGCCAACTTGACCAATTTGGAAATTCTGTACTTGTCTGACAACAAAATTTCTGGCGTTGTGCCACCGGAGCTTGCTTCTCTTCCAAGATTGACCTACCTGTATCTCGACCAGAACTCTCTATCTGGAAGGATTCCAGATGCCTTTTACCAACATCCTTACCTAAAAGAAATGTATATTGAAGGAAATCAGTTTCGCCCAGGTGTCAATCCAATTGGTGTCCATAAAATACTGGAGGTATCTGATACAGAGTTCCTGTTCTAG___TAGTTTTCTCATGCTGCTAATTATGGACAATTATGGGCTTCACTCTGCGCTCTCTCTACTCCAGAGGATAAGAAAATTTCATCTGTTCCCAACAACTTTTAATATGGGAGGCTTTGTATTGGTAATTTCTTGTAGAAACTCTTTATATTGAGTATTCGACACATTATGTCCAATGCGATGAAAAACACAAGAGCAGGCTTTTCAACACAATATTGTATTGTGCGTTTAACTAGACTGCACAAAATATGACATTTAAAAATTCCTTTTACATT

Fln Alignment:

Contig5981___ISIVIFLVLLMNVVNCKTLKRDVKALNEIKASLGWKVVYAWVGDDPCGDGDLSPxWSGVTCSHANQGEYRVVTELELYGVSIVGPFPVAVTSLLDLRRLDLHGNKLTGSIPPQIGRLKHLMILNLRWNKLQDSIPPEIGELKKLTNLYLSFNNLRGSIPKELGNLPELRYLYLHENRLTGRIPPELGILPNLRHLDVGNNHLVGTIRELIRMEGCFPSXXXXXXXXXXLTGGIPAQLANLTNLEILYLSDNKISGVVPPELASLPRLTYLYLDQNSLSGRIPDAFYQHPYLKEMYIEGNQFRPGVNPIGVHKILEVSDTEFLF
D7T9V3_________________LNLILLLSLFLDLGLCKTLKRDVKALNEIKASLGWRVVYAWVGDDPCGDGDLPPxWSGVTCS--TQGDYRVVTELEVYAVSIVGPFPTAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPPEIGELKRLTHLYLSFNNFKGEIPKELANLPELRYLYLHENRFVGRIPPELGTLQNLRHLDVGNNHLVGTIRELIRIEGCFPALRNLYLNNNYFSGGIPAQLANLTNLEILYLSHNKMSGVVPSGLAHIPRLTSLFLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVKPIGVHKVLEVSDTDFLF

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
819	10			90	0.90298
820		10		90	0.90298
821	10	90			0.90298
864	12			87	0.992554
867		87	12		0.992554
868	87			12	0.992554
898	11		88		0.923564
900		88		11	0.923564
982	20	80			0.995493
985		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain