SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5967

Length: 1910 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5967 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17155	50/50

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=DEAD-box ATP-dependent RNA helicase 9	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	dead-box atp-dependent rna helicase 53-like	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	81%
Blast2go	response to salt stress	GO:0009651	Biological Process	81%
Blast2go	Group II intron splicing	GO:0000373	Biological Process	81%
Blast2go	response to cold	GO:0009409	Biological Process	81%
Blast2go	RNA binding	GO:0003723	Molecular Function	81%
Blast2go	DNA binding	GO:0003677	Molecular Function	81%
Blast2go	cell wall	GO:0005618	Cellular Component	81%
Blast2go	protein complex	GO:0043234	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%
Blast2go	nucleolus	GO:0005730	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	GUCT	IPR012562	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKW8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 125 aas, your sequence is shorter than subject: 619 - 802

Fln protein: NVINPLSPVSRGFTRRISIFRSLQSASQYDIRRAKTINGGNISQLRCFHSPVGAFGCSAGSQLLAEYAVAEDERHASWASGGRDASDSEYGDYDKKAGAKKKVSGDDEGLDVAKLGIDEEIINSLARRGITRLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQHNRKNGRGSYPLALVLAPTRELARQVDKEFQESAPSLDTLCCYGGVPIMSQINVLRRGLDVVVGTPGRIIDLINRGALVLSEVQFIVLDEADQMLNVGFDEDVEVIMERLPKKRQSMLFSATMPVWVQRLSRKYLKDPVVIDLVGESSQKLAEGISLFSIATSTYGKRSILNPLITEYAKGGKCIVFTQTKRDADSLSVALGRVLSCEPLHGDISQNQREKTLAGFREGRFNVLIATDVAARGLDIPNVDLVIHYELPTTSEIFVHRSGRTGRAGRTGNAILIHTDQQIRQVKMIESDIGSKFKELARMKEEIDDRLGGFGDSGGSRFGSYGGSGGSRFGSSGGSRFGSSGGSGGSRFGSYGGSGGGRSGGSSYGGSGGDYGGSSYGRSGGSYGSGSGSSYGGGSGGGYGGSGSRVLVTMGSLLVLRQVPVAGLETMGAALSTR*

Protein Length: 620

Fln nts: AATGTCATAAACCCTTTGTCGCCCGTCTCTCGGGGTTTCACTCGAAGGATTTCAATCTTCCGAAGCCTGCAATCCGCCAGTCAGTACGACATCAGGAGAGCTAAAACCATCAACGGCGGCAATATCAGCCAGCTGAGATGCTTCCACTCTCCAGTCGGAGCGTTCGGCTGCAGTGCGGGTTCCCAGTTGTTAGCGGAATATGCAGTCGCGGAGGATGAGAGGCACGCGTCTTGGGCGTCAGGAGGTCGAGACGCCTCGGATTCAGAATACGGCGACTATGATAAAAAGGCCGGGGCCAAAAAGAAAGTCAGCGGTGACGACGAAGGGCTTGATGTTGCGAAGCTCGGAATTGATGAAGAAATTATTAATTCTCTCGCCAGGCGCGGTATTACTAGATTGTTCCCCATTCAGAAAGCAGTGTTGGAACCAGCAATGCAAGGTCGTGACATGATTGGTCGTGCCAGGACAGGAACTGGAAAGACTCTTGCCTTTGGAATCCCAATCTTGGACAAAATCATTCAGCACAACCGTAAAAATGGGCGTGGATCATATCCCTTGGCACTCGTCTTGGCTCCAACACGAGAACTTGCACGCCAAGTTGACAAGGAATTCCAAGAATCTGCTCCAAGCCTAGATACTCTTTGCTGTTATGGGGGTGTACCTATAATGAGCCAAATCAATGTTCTTAGAAGGGGTTTAGATGTTGTTGTTGGAACACCTGGTCGCATTATTGATCTAATCAATCGTGGTGCATTAGTCTTGTCAGAAGTACAGTTTATTGTTTTGGATGAGGCTGACCAGATGCTGAATGTGGGCTTTGATGAAGACGTTGAGGTGATTATGGAAAGATTGCCAAAAAAGCGCCAGAGTATGCTTTTTTCTGCTACAATGCCTGTCTGGGTGCAGAGGCTTTCGAGGAAATATTTAAAAGATCCAGTTGTTATTGATCTTGTTGGTGAATCATCTCAGAAGTTGGCAGAAGGAATCTCACTTTTTTCTATTGCTACATCCACCTATGGGAAACGCTCGATTCTCAACCCACTGATAACTGAATATGCCAAAGGGGGCAAATGTATTGTTTTCACTCAAACAAAGCGAGATGCGGATAGTCTGTCGGTGGCACTGGGTCGAGTACTTTCATGTGAACCTCTTCATGGTGATATTTCACAGAATCAGCGAGAGAAGACTCTTGCTGGATTTCGTGAGGGGCGTTTTAATGTGCTGATTGCTACTGATGTAGCTGCACGCGGTCTTGATATTCCTAATGTGGATCTGGTTATTCATTATGAGCTCCCAACAACTTCAGAGATTTTTGTGCATAGATCTGGGCGAACAGGGCGTGCTGGTAGGACGGGCAATGCTATCCTTATCCATACCGACCAACAGATTAGACAAGTTAAGATGATTGAAAGTGATATAGGTTCCAAGTTTAAAGAGCTGGCTCGGATGAAAGAGGAAATAGACGATAGACTTGGTGGTTTTGGTGATTCAGGAGGCAGCCGTTTTGGAAGCTATGGTGGTTCAGGGGGGAGCCGTTTTGGAAGTTCTGGTGGGAGCCGTTTTGGAAGTTCTGGTGGTTCAGGAGGGAGCCGTTTTGGAAGCTATGGTGGTTCGGGAGGGGGCCGATCTGGTGGTTCAAGCTATGGTGGATCAGGAGGAGATTATGGGGGTTCAAGTTATGGCAGATCAGGAGGCAGTTACGGTAGTGGATCAGGAAGTAGCTATGGTGGTGGGTCAGGAGGTGGCTATGGTGGTTCTGGATCCCGCGTTTTAGTGACTATGGGGAGTCTTCTAGTTCTCAGACAGGTTCCAGTAGCAGGTTTGGAGACTATGGGGGCCGCTCTGAGTACTAGATGAGACGTTAAAATATTTGAAGGAGTTTAGTAGCAGGAATTTTGAATTTTGACATT

Fln Alignment:

Contig5967___VSGDDEGLDVAKLGIDEEIINSLARRGITRLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQHNRKNG----RGSYPLALVLAPTRELARQVDKEFQESAPSLDTLCCYGGVPIMSQINVLRRGLDVVVGTPGRIIDLINRGALVLSEVQFIVLDEADQMLNVGFDEDVEVIMERLPKKRQSMLFSATMPVWVQRLSRKYLKDPVVIDLVGESSQKLAEGISLFSIATST--YGKRSILNPLITEYAKGGKCIVFTQTKRDADSLSVALGRVLSCEPLHGDISQNQREKTLAGFREGRFNVLIATDVAARGLDIPNVDLVIHYELPTTSEIFVHXXXXXXXXXXXGNAILIHTDQQIRQVKMIESDIGSKFKELARMKEE
B8LKW8_________________VDNNDGNLDLSGLNLSQELVEALANRGITHLFPIQRAVLVPALEGRDLIGRAKTGTGKTLAFGIPIIERLTKDNKENKLLRQSRRLPRVLVLAPTRELAKQVEKEFKESAPFLSTACIYGGVSYVSQQNALARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDEADQMLAVGFEEDVEIILDNLPAERQSMLFSATMPGWVKKLSRKHLNNPMTIDLVGENEEKLAEGIKLYAVATTTSSNSKRSILGDLITVFAKGGKTIVFTQTKRDADEISLGLSSTIACEALHGDISQHQRERTLAGFREGKFSALVATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGRTGRAGKEGIAILMYPSNGKRKVRSLEHEVGCRFEYINPPRQE

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1460	14	85			0.993533
1462		85		14	0.993533
1464	85			14	0.993533
1547		14	85		0.993533
1549			83	16	0.994512
1550	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain