SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5966

Length: 1080 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5966

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11080	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	tubby-like protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tubby, C-terminal	IPR000007	-	0.0	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQW2

Fln msg: your sequence is shorter than subject: 308 - 408

Fln protein: CVKAVDQSGKLTFPSSLKQPGARDPPMQCFIKRRKETSTYYLYLGLTPTFMENGKFLLAARRFRHPTSTEYIISLDADDLSQGSNAYVGKLSSDFLGTKFTIYDSQPPHNGARLSSNRAGRRVASKQVSPRVPAGSYNVGQVAYKFNLLGSRGPRRMQCLLHSVQFSTMEHIGKVSTCKEVSDSTIDKSISTLNGEGSSKFSESSDIPVGKCAPIILKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAAIDPSRPGAQVDQDAVLLQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFGTKLACE*

Protein Length: 309

Fln nts: AATGTGTCAAAGCAGTTGATCAGAGTGGGAAGCTGACTTTTCCCTCTTCTCTGAAGCAGCCTGGTGCACGTGACCCTCCGATGCAGTGTTTCATTAAAAGGCGCAAAGAAACATCCACATATTACTTGTATCTCGGGCTTACACCAACGTTTATGGAAAATGGGAAATTTCTATTGGCTGCAAGGAGGTTCAGGCATCCAACTAGTACTGAATACATAATCTCTCTTGACGCTGATGATCTCTCCCAAGGAAGCAATGCTTATGTAGGAAAACTGAGCTCTGATTTCCTGGGCACTAAATTTACTATCTATGATAGTCAACCACCACATAATGGTGCACGACTCTCAAGCAATCGAGCTGGTCGGCGGGTAGCATCAAAACAAGTCTCTCCTCGAGTTCCAGCTGGAAGTTATAATGTTGGACAGGTAGCTTACAAGTTTAATCTTTTGGGCTCAAGGGGTCCTAGACGGATGCAATGCCTACTTCATTCTGTACAATTCTCAACCATGGAACACATAGGAAAAGTTTCGACTTGTAAAGAAGTCTCAGATTCCACAATTGATAAATCAATATCCACATTGAATGGAGAAGGATCTAGCAAATTTTCAGAATCTTCTGACATTCCTGTTGGAAAATGTGCACCTATAATTTTGAAGAACAAGGCTCCAAGATGGCATGAACAACTGCAGTGTTGGTGTTTGAATTTTCATGGGCGTGTAACTGTGGCTTCTGTAAAGAATTTCCAGTTAGTTGCTGCCATAGACCCTAGTCGGCCAGGAGCACAAGTTGATCAAGATGCAGTTCTTCTCCAGTTTGGTAAGGTTGGAAAGGACATGTTTACAATGGACTATAGATATCCTCTGTCAGCCTTCCAGGCATTTGCAATATGCTTGACCAGCTTTGGTACTAAACTTGCTTGTGAATGA___GACCATATTTGTGATGTAGCTTCTCAAGAAAGAAAAACATAATTGACAAAAATGATTTGGGGTTGATTATGAAGATGTTTGTCATCTGATGTTTTAATGAAGGGTTTAAGCAAGATTATTCACTAGAAGCTTGCTATAGGGATATTATGACCCA

Fln Alignment:

Contig5966___VKAVDQSGKLTFPSSLKQPGARDPPMQCFIKRRKETSTYYLYLGLTPTFMENGKFLLAARRFRHPTSTEYIISLDADDLSQGSNAYVGKLSSDFLGTKFTIYDSQPPHNGARLSSNRAGRRVASKQVSPRVPAGSYNVGQVAYKFNLLGSRGPRRMQCLLHSVQFSTMEHIGKVSTCKEVSDSTIDKSISTLNGEGSSKFSESSDIPVGKCAPIILKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAAIDPSRPGAQVDQDAVLLQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFGTKLACE
B8LQW2_________________VKAPDQSGKLTFPASLKQPGARDPPMQCFIKRRKETSTYYLYLGLTPTFLENGKFLLAARRFRHPTSTEYIISLDAEDLSQGSNAYVGKLSSDFLGTKFTIYDSQPPHNGARLSSNRAGRRVASKQVSPRVPAGSYNVGQVAYKFNLLGSRGPRRMQCTLHSVPFSTMEQRGKVSTSKEISDSTIDKSTSTLNGEGSSKVSESCDIPVGKCAPIILKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAAIDPSRPGAQVDQDAVLLQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFGTKLACE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
122	20	80			0.995493
125	80		20		0.995493
160	20		80		0.995493
363		25	75		0.996473
693	25		50	25	0.995533
696			66	33	0.997452
790	25	75			0.996473
915	20	80			0.995493
917	80		20		0.995493
918	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain