SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5958

Length: 1094 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5958

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7715	28/28

Source	Descriptions	Term	Type	Identity
AutoFact	UPF0497 membrane protein 3 n=1 Tax=Picea sitchensis RepID=U4973_PICSI	-	-	73%
FL-Next	sp=CASP-like protein 7; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	uncharacterized protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	0.0	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant subgroup	IPR006459	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN43

Fln msg:

Fln protein: MSSNNGMPVERQVQIQIQDGKMGMGLGMDSSTMSGPLVAHSGILDGDYERTPTVGKMQMRFDLANVALRVLSLACSVVALVSMASNQESGVVTVFGFKLAVYSKWSYSDSFEFLVGASAAAAAHSLLQLLLCGMKMVKRTSTIPSRNHAWLLFAGDQVFAYGMLAAASAAAGVTNLNRTGFRHSDLPNFCKPLHRFCDKAAISIVFAFTSSLLLGGSAVLDVFWLSKN*

Protein Length: 230

Fln nts: AGTCGGACGAAATGTGATCCCAGGATTTGATCTCTGTCAGGAAAAAAGCAGACCATCAACGCTCTGAAAAACCTACAAAAATGTACCCAGTTGCTCCTTTCAATGATCGCAGCAATATCATAGTATAGGTAGTATAGCCTGGGTCTCAGAGAAACCAGAAAACAGGGTTCGGTTCTGTTACTGGCCTCTGCTGTTTCGTTTGGCTTGGTTTGGCTTTTCTGTTGAGTAATTTGGTGTGAGGAGCAACG_-_ATGAGCAGCAACAATGGGATGCCTGTGGAAAGACAGGTACAAATTCAGATCCAGGATGGAAAAATGGGCATGGGGCTTGGGATGGATTCGAGTACCATGAGTGGGCCTCTGGTTGCCCACTCTGGAATTCTTGATGGAGATTATGAGAGGACGCCAACCGTGGGTAAGATGCAGATGCGGTTTGATCTTGCTAATGTTGCTCTCCGTGTGCTGAGCTTGGCTTGCTCAGTTGTAGCTCTGGTGTCCATGGCCAGCAATCAGGAGTCAGGGGTTGTTACTGTGTTTGGATTCAAGCTTGCTGTGTATTCCAAGTGGTCCTATTCTGATTCATTTGAATTCTTGGTGGGAGCTTCAGCAGCTGCTGCTGCTCATTCATTGCTTCAACTTCTGCTATGTGGAATGAAGATGGTGAAAAGGACATCTACTATTCCCAGCAGGAATCATGCCTGGTTGTTGTTTGCAGGCGATCAGGTCTTTGCATATGGGATGCTGGCAGCAGCATCGGCAGCTGCAGGAGTGACGAACCTCAACCGCACTGGATTCCGCCACTCTGACCTTCCAAACTTCTGCAAGCCGCTTCATCGCTTCTGTGACAAGGCCGCCATCTCCATCGTTTTTGCATTCACCAGCTCTCTCCTTCTGGGAGGCTCTGCAGTTTTGGACGTTTTCTGGCTCTCCAAAAACTAG___CTAGCCTGCTTTGTTGGTGTAAAATTACTTATTTATTTATCTCCTTTTCTTCCCCGCGGGTATATAATGATCTCCTTGGATAGAGAATTTTCGTTCTCTTGTGTTTCTGAACAAAGAAGTGTTTTTTGGCAACTATCAGCGATGCATTACTGGTACATT

Fln Alignment:

Contig5958___MGLGMDSSTMSGPLVAHSGILDGDYERTPTVGKMQMRFDLANXXXXXXXXXXXXXXXXXXXXNQESGVVTVFGFKLAVYSKWSYSDSFEFXXXXXXXXXXXXXXXXXXCGMKMVKRTSTIPSRNHAWLLFAGDQVFAYGMLXXXXXXXGVTNLNRTGFRHSDLPNFCKPLHRFCDKAAISIVFAFTSSLLLGGSAVLDVFWLSKN
A9NN43_________________MGIGMDSSTMSGPLVAHSGILDGDYEKRPAVCKMQMRFDLANVGLRVLSLACSLVALVSMASNQESGVVTVFGFKLPVYSKWSYSDSFEFLVGASAAAAAHSLLQLLLCGMKMVKRASTIPSRNHAWLLFAGDQVFAYGMLAAASAAAGVTNLNRTGFRHSDLPNFCKPLHRFCDKAAISIVFAFISSLILGGSAVLDVFWLSKN

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
342	25		75		0.996473
345	75			25	0.996473
414	25		75		0.996473
539	25		75		0.996473
542			25	75	0.996473
543		75		25	0.996473
605	20	80			0.995493
608		80		20	0.995493
700	16			83	0.994512
701		16	83		0.994512
702	16		83		0.994512
726		83		16	0.994512
727	16			83	0.994512
854	20	80			0.995493
953	12			87	0.992554
954		12		87	0.992554
955	12		87		0.992554
956			87	12	0.992554
969		16		83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
606	617	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain