SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5953

Length: 1357 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5953 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16376	41/41

Source	Descriptions	Term	Type	Identity
AutoFact	gamma-aminobutyrate transaminase subunit precursor isozyme 1 [Solanum lycopersicum] dbj\|BAG16482.1\| gamma aminobutyrate transaminase isoform1 [Solanum lycopersicum]	-	-	73%
FL-Next	tr=Ornithine aminotransferase; Pinus sylvestris (Scots pine).	-	-	27%
Blast2go	uncharacterized aminotransferase y4ub-like	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	86%
Blast2go	gamma-aminobutyric acid catabolic process	GO:0009450	Biological Process	86%
Blast2go	glutamate decarboxylation to succinate	GO:0006540	Biological Process	86%
Blast2go	pollen tube adhesion	GO:0009865	Biological Process	86%
Blast2go	fruit development	GO:0010154	Biological Process	86%
Blast2go	shoot system development	GO:0022621	Biological Process	86%
Blast2go	beta-alanine catabolic process	GO:0019484	Biological Process	86%
Blast2go	pollen tube growth	GO:0009860	Biological Process	86%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	86%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	86%
Blast2go	response to organic substance	GO:0010033	Biological Process	86%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	86%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	86%
Blast2go	4-aminobutyrate:pyruvate transaminase activity	GO:0034387	Molecular Function	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminotransferase class-III	IPR005814	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1RPP3

Fln msg: your sequence is shorter than subject: 436 - 468

Fln protein: NVLIIDKSEGVFVYDTNGNKYLDALAGLWCNPLGGNEPRLVAAATEQLNKLPFYHSFWNRTTQPSLDLAKEVLETFKANKMSKVFFTNGGSDANDSQVKLVWYYNNALGRPKKKKFIARQKSYHGSTLIAASLSGLTNLHQNFDLPLPFVLHTDCPHYWRYHLPGETEEDFATRLADNLEKLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSIAKALSSSYMPIGAMLVGKEVADVVLSESNKLGSFAHGFTYSGHPVACAVALEALKIYKERNLVDHVRKISPLFQDGMRHLAKSPIIGEMRGTGLIMGVEFTDNKSPNDVFPPEWGVGAYFGAQCAERGMLVRVAGDTIMMSPPYIMQPENFQQLIHIFGEALKSTEERIQYIKSQRNK*

Protein Length: 437

Fln nts: AATGTATTGATAATTGACAAATCTGAGGGTGTTTTTGTATATGATACTAATGGGAATAAGTATCTTGATGCACTTGCAGGCCTTTGGTGCAATCCTTTGGGAGGAAATGAACCACGTCTTGTAGCGGCTGCTACAGAACAACTCAATAAGTTGCCCTTTTATCACTCATTTTGGAACCGTACCACTCAGCCTTCATTGGACCTTGCTAAGGAAGTTCTTGAAACATTCAAAGCAAATAAAATGAGTAAGGTTTTTTTTACAAACGGTGGTTCAGATGCCAATGATAGTCAGGTGAAGCTGGTGTGGTATTACAACAACGCCTTGGGAAGACCCAAGAAGAAGAAATTTATTGCTCGGCAGAAATCGTACCATGGATCAACATTGATAGCAGCAAGTCTTTCAGGGCTAACAAATCTTCATCAAAATTTTGATTTACCATTGCCATTTGTGCTGCATACAGACTGCCCCCACTATTGGCGCTATCATTTGCCAGGTGAGACTGAAGAAGACTTTGCAACGAGGTTAGCAGATAACTTGGAAAAGCTTATATTAAAAGAAGGTCCAGAAACGATTGCTGCATTCATTGCAGAACCTGTCATGGGTGCTGGTGGAGTCATTCCGCCCCCTGCCACATATTTTGAAAAGGTGCAAGCAGTTGTAAAGAAATATGACATCTTATTTATTGCAGATGAAGTTATATGTGCCTTTGGAAGGTTGGGAACAATGTTTGGATGTGACAAGTACAATATTAAGCCAGACCTTGTCTCAATAGCTAAAGCTCTTTCATCTTCATACATGCCCATAGGTGCAATGTTGGTAGGCAAAGAGGTTGCTGATGTTGTTCTTTCTGAAAGCAACAAACTTGGTTCCTTTGCACATGGCTTTACTTACTCCGGGCACCCTGTAGCATGTGCTGTTGCATTGGAGGCTTTGAAGATATACAAGGAAAGAAATTTGGTTGACCATGTTCGGAAGATTTCCCCACTATTCCAAGATGGCATGAGGCATTTGGCCAAGAGCCCCATTATTGGAGAGATGCGTGGAACAGGACTGATCATGGGAGTAGAATTTACAGATAACAAGTCACCTAATGATGTCTTCCCACCTGAATGGGGCGTAGGAGCATACTTTGGAGCTCAATGTGCAGAGCGGGGAATGTTGGTGCGCGTTGCTGGTGATACCATCATGATGTCCCCTCCATACATCATGCAACCTGAAAATTTTCAACAACTGATCCACATCTTTGGGGAAGCCCTAAAGAGTACGGAGGAGCGGATTCAATATATTAAATCTCAACGTAACAAATAA___ATATTTCTCAGGTCGTAATGCCAATAAAGAAAATTGAAATGGTTACATT

Fln Alignment:

Contig5953___LIIDKSEGVFVYDTNGNKYLDALAGLWCNPLGGNEPRLVAAATEQLNKLPFYHSFWNRTTQPSLDLAKEVLETFKANKMSKVFFTNGGSDANDSQVKLV--WYYNNALGRPKKKKFIARQKSYHGSTLIAASLSGLTNLHQNFDLPLPFVLHTDCPHYWRYHLPGETEEDFATRLADNLEKLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSIAKALSSSYMPIGAMLVGKEVADVVLSESNKLGSFAHGFTYSGHPVACAVALEALKIYKERNLVDHVRKISPLFQDGMRHLAKS--PIIGEMRGTGLIMGVEFTDNKSPNDVFPPEWGVGAYFGAQ-CAERGMLVR-VAGDTIMMSPPYIMQPENFQQLIHIFGEALK
Q1RPP3_________________MVFSKAKDVHVWDPEGRKYLDFLSAYSAVNQGHCHEKILNALSQQAQQLTLSSRAFHNDIFPIF--AQHLTSMFGYEMILPM---NTGAEGVETALKLARKWGYEKKHIPKNEAIIISCCGCFHGRTTAVISMSCDNEATRGFG---PF-------------LPGLLKVDFGD--ADSLKSMFEAHG-DKVAGFLFEPIQGEAGVIVPPKGYLQSVRELCSKYNVLMIADEIQTGIGRTGKLLACEWESVRPDVVILGKALGGGVLPVSAVLADK---DIML--CFKPGE--HGSTFGGNPLASAVAIAALEIVEEEKLAERAAEMGQVFRSQFLDIQKAYPHIIKEVRGQGLLNAVELNAKGLST--------VSAFDICQRLKERGVLAKPTHGTIIRFSPPLTIRLKELTEASKAFKDVLE

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
535	14			85	0.993533
536	14			85	0.993533
539		85		14	0.993533
640	12			87	0.992554
641	12	87			0.992554
642		87		12	0.992554
643		87	12		0.992554
644	87			12	0.992554
668	12			87	0.992554
672		87		12	0.992554
688	14		85		0.993533
693	85			14	0.993533
708	14	85			0.993533
709	14			85	0.993533
727	25			75	0.996473
728		25	75		0.996473
731			75	25	0.996473
878	83	16			0.994512
902		33		66	1.0
986	20			80	0.995493
988	20	80			0.995493
989	80			20	0.995493
998		25		75	0.996473
1001		66		33	0.997452
1118	66		33		0.997452
1173			85	14	0.993533
1174			85	14	0.993533
1236			80	20	0.995493
1237		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain