SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5949

Length: 1505 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5949

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10976	28/28

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar protein sorting-associated protein 33-like protein [Arabidopsis thaliana] sp\|Q94KJ7.1\|VPS33_ARATH RecName: Full=Vacuolar protein sorting-associated protein 33 homolog; Short=AtVPS33 gb\|AAK48903.1\|AF357527_1 VPS33 [Arabidopsis thaliana] gb\|AEE7930	-	-	65%
FL-Next	sp=Vacuolar protein sorting-associated protein 33 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	68%
Blast2go	vacuolar protein sorting-associated protein 33-like protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	vesicle docking involved in exocytosis	GO:0006904	Biological Process	81%
Blast2go	protein secretion	GO:0009306	Biological Process	81%
Blast2go	vacuole organization	GO:0007033	Biological Process	81%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	81%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sec1-like protein	IPR001619	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q94KJ7

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 493 - 592

Fln protein: MAQIPNLDNAPINLSSLRECSQKELVHILTTIRGRKMLFLDPKLSGPLALIAQTSLLKEHGVENLRHLSADPIQTDCKSIMYLVRPQVNFMKMISSHIQHDTKQNLQREYTVIFVPRRTIVCEKVLEVEKVHAMVTIGEYPLYIVPVDEDVLSFELELAYKECQVDGDTSSLWHVSKAIHKLQSTFGVIPNVRAKGKAATNVADILSRMQQEQPIVSANTGMPEIDTLILLDRHVDMVTPMCSQLTYEGLLDEFLHINNGAVELDASVMGVQQGGKKIKIPLNSSDKLYREIRDLNFGVVGQVLRQKATTMKQDYTEVTTTNQTVSELKDFVKKLNSLPEMTRHTNLAQHLSNFTTKPTFLGRLSIEQTLVEGQSYDICFEYIEEMIHKQEPFLSVLRLLVLFSITNGGLPKKHFDYLRRELLHSYGFEHMATLINLEKAGLVKKQESKSNWLAIKRGLNLVMEDVDDANPSDIAYVFSGYAPLSIRLVQHAL

Protein Length: 494

Fln nts: CCTCGGTGGTGATTCATAACTGAGA_-_ATGGCGCAGATCCCTAACCTGGACAATGCCCCGATAAATCTATCATCCCTGAGGGAGTGTTCTCAGAAGGAACTCGTGCACATTCTGACAACAATTCGTGGTAGGAAGATGCTTTTTCTGGATCCGAAACTTAGCGGGCCGCTAGCGCTGATTGCTCAAACATCTCTTTTGAAGGAGCATGGGGTGGAAAACTTGCGCCATCTTTCGGCTGATCCTATTCAGACTGATTGTAAAAGTATAATGTACCTTGTTCGGCCTCAAGTTAATTTTATGAAGATGATTTCGTCGCATATTCAGCATGATACTAAGCAAAATCTTCAAAGAGAATATACTGTGATCTTTGTTCCACGCCGCACTATTGTTTGTGAGAAGGTTTTAGAGGTGGAAAAGGTTCATGCAATGGTGACGATTGGAGAGTATCCTTTATACATAGTACCGGTTGATGAAGATGTCCTGTCATTTGAACTGGAGTTGGCATACAAAGAATGTCAAGTTGATGGCGACACAAGTTCCCTTTGGCATGTCTCAAAAGCTATTCACAAACTTCAGTCTACCTTTGGTGTCATACCAAATGTGAGAGCAAAAGGCAAGGCGGCCACAAATGTTGCAGATATTCTGAGTCGTATGCAGCAGGAACAGCCTATTGTCTCAGCCAATACAGGGATGCCAGAGATCGATACGCTCATTTTACTTGATCGACATGTGGACATGGTTACTCCAATGTGTTCCCAGTTGACTTATGAAGGCCTTCTAGATGAGTTCTTACATATCAATAATGGTGCAGTAGAGTTGGATGCATCAGTCATGGGTGTCCAGCAGGGTGGCAAAAAAATCAAGATACCACTGAATTCCAGTGATAAATTATATAGAGAGATTCGTGATCTCAATTTTGGAGTTGTTGGGCAGGTTTTGCGTCAAAAAGCAACAACCATGAAGCAGGATTATACAGAAGTTACAACTACTAATCAAACAGTATCAGAGTTGAAGGATTTTGTGAAGAAGTTGAATTCTCTCCCAGAAATGACAAGACACACAAATCTGGCTCAACATCTGTCGAATTTTACTACAAAACCAACTTTTTTAGGCCGACTTTCTATTGAACAGACACTTGTGGAGGGTCAGAGTTATGACATATGTTTTGAATATATTGAAGAAATGATTCATAAGCAGGAGCCGTTTCTGAGTGTCTTGCGTTTGCTTGTTCTCTTTTCTATCACCAATGGTGGCTTGCCGAAAAAGCACTTTGATTATTTGAGGAGAGAGCTGCTTCATAGCTATGGCTTTGAGCACATGGCGACACTTATTAACTTGGAAAAGGCTGGTTTGGTTAAGAAACAGGAATCGAAGAGCAACTGGCTAGCTATTAAGCGGGGGCTGAATCTAGTTATGGAAGATGTTGATGATGCAAATCCCAGTGATATTGCATATGTATTCTCTGGATATGCTCCTTTGAGTATTAGACTTGTTCAGCATGCTCTCA

Fln Alignment:

Contig5949___MAQIPNLDNAPINLSSLRECSQKELVHILTTIRGRKMLFLDPKLSGPLALIAQTSLLKEHGVENLRHLSADPIQTDCKSIMYLVRPQVNFMKMISSHIQHDTKQNLQREYTVIFVPRRTIVCEKVLEVEKVHAMVTIGEYPLYIVPVDEDVLSFELELAYKECQVDGDTSSLWHVSKAIHKLQSTFGVIPNVRAKGKAATNVADILSRMQQEQPIVSANTGMPEIDTLILLDRHVDMVTPMCSQLTYEGLLDEFLHINNGAVELDASVMGVQQGGKKIKIPLNSSDKLYREIRDLNFGVVGQVLRQKATTMKQDYTEVTTTNQTVSELKDFVKKLNSLPEMTRHTNLAQHLSNFTTKPTFLGRLSIEQTLVEGQSYDICFEYIEEMIHKQEPXXXXXXXXXXXXITNGGLPKKHFDYLRRELLHSYGFEHMATLINLEKAGLVKKQESKSNWLAIKRGLNLVMEDVDDANPSDIAYVFSGYAPLSIRLVQHAL
Q94KJ7_________________MAQIPSLENAPLNLKSIRDKSERELVNLLKDVRGTKCLVIDPKLSGSVSLIIPTSKLKELGLE-LRHLTAEPVQTECTKVVYLVRSQLSFMKFIASHIQNDIAKAIQRDYYVYFVPRRSVACEKILEQEKVHNLVTVKEFPLYMVPLDEDVISFELELSEKDCLVDGDVSSLWHIAKAIHELEFSFGVISKMRAKGKASVRVADILNRMQVEEPVNSNDVGRPEVDTLILLDREVDMVTPMCSQLTYEGLIDEILHISNGAVEVDSSVMGAQQEGKKMKVPLNSSDKLFKETRDLNFEVVVQVLRQKAMTMKEDYTEINST-QTVSELKDFVKKLNSLPEMTRHIHLAQHLTTFTSKQSFNSQLDMEQTLVEAENYDICYEYIEEMIHKQEPLTNVLRLLVLFSVTNSGLPKKQFDYIRMELLHSYGFEHVVTLNNLEKAGLLKKQEFKSNWLTVKRTLKLIVEDTDTSRPNDIAYVYSGYAPLSIRLIQQAI

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
381	33	66			0.997452
383	66		33		0.997452
473		12	87		0.992554
508	87			12	0.992554
633	25		75		0.996473
637	75			25	0.996473
1016	14			71	0.984337
1018			14	85	0.993533
1182	87	12			0.992554
1185			87	12	0.992554
1192	85			14	0.993533
1201	16	66			0.988813
1203	33		66		1.0
1299	25			75	0.996473
1301			75	25	0.996473
1302		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain