SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5945

Length: 759 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5945 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2394	12/13

Source	Descriptions	Term	Type	Identity
AutoFact	cohesin complex subunit SA-1/2 [Arabidopsis thaliana] emb\|CAB45374.1\| stromalin protein [Arabidopsis thaliana] gb\|AAL36271.1\| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gb\|AAC63652.2\| putative putative sister-chromatide co	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	54%
Blast2go	sister-chromatide cohesion protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation	GO:0051455	Biological Process	82%
Blast2go	meiotic sister chromatid cohesion, centromeric	GO:0051754	Biological Process	82%
Blast2go	DNA binding	GO:0003677	Molecular Function	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%
Blast2go	chromosome	GO:0005694	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Nuclear pore localisation protein NPL4	IPR007717	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	STAG	IPR013721	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
293	16			83	0.994512
325	10	90			0.90298
327			90	10	0.90298
328	90		10		0.90298
329	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain