SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5941

Length: 1121 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5941

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1154	19/21

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1997 domain containing protein	-	-	4.0e-34	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	uncharacterized protein	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZC5

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MALLKQIGKPATRYRVPYTRSMPHIIMQAERTVSFSSELSTDLPLYEPSQVPFEQYLTDRERIFQAIFPDKRRSEKLNDEEWRIHMLPIEFVFLTAFPVIDMSIIVKAPGQGYPPGISKSVKKVLTLEATRWRLRGLDYVLQPSDFVLGVRGALYSENNGLRSRLKGLMEMNVTFALPPALAVIPEDILKSIGHSVLIQLLENMKERVNSKVLADYRDYAKEQTNASQGWREGQVIKPAL*

Protein Length: 242

Fln nts: CTTCTCACACAAGGCATTTTTAGGTACATGATTCGTGCAGAAGATTGCCTACTGAATACCT_-_ATGGCTTTACTAAAACAAATTGGCAAACCAGCAACGCGATACAGAGTGCCTTATACAAGATCAATGCCCCATATAATCATGCAAGCAGAGAGAACTGTCAGCTTCTCATCTGAACTTAGCACCGATCTTCCTCTTTATGAGCCTTCTCAGGTTCCCTTTGAGCAATATCTAACTGACAGGGAAAGAATATTTCAAGCAATATTCCCAGATAAAAGGAGGAGCGAGAAACTAAATGATGAAGAATGGCGAATTCATATGTTACCTATTGAGTTCGTTTTCTTGACTGCATTTCCAGTCATTGATATGAGTATTATAGTAAAAGCACCAGGGCAAGGATATCCCCCCGGGATTTCAAAAAGTGTCAAAAAAGTGCTAACCTTGGAAGCTACAAGATGGCGGCTTCGAGGCTTAGACTATGTTTTGCAGCCATCAGACTTTGTACTCGGAGTTCGTGGAGCTCTTTACTCGGAAAATAATGGGCTTAGGTCAAGGCTAAAGGGACTGATGGAGATGAATGTTACCTTTGCCTTACCTCCAGCACTAGCTGTTATTCCTGAAGACATTCTTAAAAGCATTGGACATTCGGTACTGATTCAACTGTTGGAGAACATGAAAGAGAGAGTCAATAGCAAAGTTCTTGCCGATTACAGAGATTATGCAAAAGAACAGACAAATGCTAGTCAGGGCTGGAGAGAGGGTCAAGTTATAAAGCCAGCACTCTAAATATGTAGGCATTTGCTAATATATTATATAACGCTTGTTGATGAGAAAGAGCCCACAATGGCATTTGATCTGATGCAACACTACATTATCCATATGGATTTGTTAAGACTGTTCTCTTAAACTCTACACGCTTGAGAGCATAATATGTAAAGAAATTTCCTGTATCCTATTTATTCCTGACTAAACTGGGAGCCTCATACTCTCCTGGGGATTATGATCCTCCGCCAAATACATTCCCTTCACGATGGTTAAAGATTACTACAGTAGCTCTGCTTCTGCTTTACACTAGCTCCTCTTCTGCTTCTGGTGCAGAGTAACGTTTCTCTTGCATGACATT

Fln Alignment:

Contig5941___GKPATRYRVPYTRSMPHIIMQAERTVSFSSELSTDLPLYEPSQVPFEQYLTDRERIFQAIFPDKRRSEKLNDEEWRIHMLPIEFVFLTAFPVIDMSIIVKAPGQGYPPGISKSVKKVLTLEATRWRLRGLDYVLQPSDFVLGVRGALYSENNGLRSRLKGLMEMNVTFALPPALAVIPEDILKSIGHSVLIQLLENMKERVNSKVLADYRDYAKEQTNASQGWREGQVIKPAL
A9NZC5_________________GKAATPYRVPYTRSMPQITMQAERTVSFSSELSTDLPLYEPSEVPFEQYLSDRERIFQAIFPDKRRSEKLNDEEWRIHMLPIEFLFLTAFPVIDMSIIVKAPGQGYPPGISKNVKKVLTLEATRWELRGLDYVLQPSDFVLGVRGALYSENNGVRSRLKGLMEMTVSFVLPPALAVIPEDILKSIGHAVLIQLLENMKGRVNRKLLADYRDYSKEQKIASQSWREGQAIKPAL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
337	14		85		0.993533
381	60		40		1.0
402	20			80	0.995493
404	25	75			0.996473
405		75		25	0.996473
406		75		25	0.996473
531	50		50		1.0
573		12	87		0.992554
576			87	12	0.992554
692	20		80		0.995493
695	80			20	0.995493
696	80			20	0.995493
721	20		80		0.995493
724	80			20	0.995493
725	80			20	0.995493
774	16		83		0.994512
776	16	83			0.994512
777	83			16	0.994512
778			80	20	0.995493
846	20		80		0.995493
864	50	50			1.0
915		60		40	1.0
1017	66			33	0.997452
1018		66		33	0.997452
1019	66			33	0.997452
1020	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain