SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5936

Length: 751 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5936

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7905	12/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BTB domain containing protein	-	-	2.0e-05	29%
FL-Next	sp=ETO1-like protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	83%
Blast2go	eto1-like protein 1-like	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of ethylene biosynthetic process	GO:0010364	Biological Process	0.0	77%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3		IPR013089	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
175	16			83	0.994512
269	40		60		1.0
270	60	40			1.0
272			60	40	1.0
273	60			40	1.0
298	20			80	0.995493
300			80	20	0.995493
337		20		80	0.995493
338	20			80	0.995493
339			80	20	0.995493
406	25		75		0.996473
416	25	75			0.996473
417			75	25	0.996473
502		40		60	1.0
506	14	85			0.993533
507	14			85	0.993533
509		85	14		0.993533
510	85			14	0.993533
548	25		75		0.996473
550	25	75			0.996473
551			75	25	0.996473
552			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain