SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5920

Length: 1889 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5920 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27644	45/46

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Picea sitchensis RepID=A9NUR2_PICSI	-	-	91%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	beta-galactosidase 8	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	79%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: your sequence is shorter than subject: 580 - 861

Fln protein: RFFQRGGTFQNYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVSQPKWGHLKELHKAIKLCETALVNAEANYTSFGSGLEAHVYSLGSGTCAAFLANINTQSDATVKFNGNSYHLPAWSVSILPDCKNVVFNTAKISSQTTSVQMNPANLILAGSNSIKGTDSGNATPWSWLHEQIGISGSNTFSKPGLLEQISTTVDASDYLWYTTSIQVDDDQPFLHGGTQPVLHVHSLGHALHVFINGEFAGTGAGSGSSSKITLQKVISLKSGKNIIDLLSVTVGLQNYGSFFDTWGAGITGPVTLQGFKDGEHNLSTQQWTYQIGLTGEQLEFYLGETTASVQWIAGSNLPTNQTMIWYKTNFDAPSGNDPVALNLFGMGKGVAWVNGKSIGRYWPSYIASQSGCTDSCDYRGAYSSSKCLTNCGQPSQKLYHVPRSWIQSTGNVLVLFEELGGDPTQISFVARSVGTVCARVSETHLPPVGSWKLSATSGLKVNKPKAELQLHCPSSGHLIKSIKFASFGTPTGRCGSFTYGHCNTNSTMSIIEEACIGRESCSVEVSIEKFGDPCRGTVKNLAVEASCS*

Protein Length: 581

Fln nts: CACGCTTCTTCCAAAGAGGGGGTACATTTCAAAACTATTATATGTATCATGGAGGAACAAACTTTGGTCGTACAACAGGTGGCCCTTTTATTGCTACCAGCTATGACTATGATGCTCCCATTGATGAATATGGAATTGTGAGTCAGCCTAAATGGGGACATCTTAAGGAGCTACACAAGGCCATTAAGCTTTGTGAAACAGCTTTGGTCAATGCAGAGGCAAATTACACATCTTTTGGTTCTGGGCTAGAGGCACATGTTTACTCTTTGGGATCTGGAACATGTGCAGCATTTCTTGCCAATATTAATACACAGTCCGATGCAACTGTGAAGTTCAATGGGAACTCTTATCATTTGCCTGCATGGTCTGTCAGCATCCTCCCTGATTGCAAAAATGTGGTGTTCAATACTGCAAAGATTAGTTCCCAGACCACTTCTGTACAAATGAATCCAGCCAATTTGATATTGGCAGGATCCAATTCCATAAAAGGCACAGATTCTGGGAATGCAACACCTTGGAGTTGGCTGCATGAGCAGATAGGAATTTCTGGAAGCAATACATTCTCAAAACCAGGTTTACTGGAACAAATAAGTACAACTGTGGATGCTAGTGACTATTTATGGTACACAACAAGCATTCAAGTCGATGATGATCAACCATTTCTTCATGGTGGAACTCAACCAGTTCTCCACGTGCACTCCTTGGGACATGCTTTACATGTTTTTATCAATGGAGAATTTGCAGGTACTGGAGCTGGTAGTGGTAGTAGTTCAAAAATCACACTACAAAAGGTCATCTCTTTGAAGTCGGGAAAAAATATTATTGATCTATTAAGTGTCACAGTAGGCTTACAGAACTATGGGTCATTTTTTGATACATGGGGTGCAGGAATCACTGGTCCAGTTACATTGCAAGGTTTCAAGGATGGGGAACATAATTTGTCCACACAACAGTGGACATATCAGATTGGATTGACTGGTGAACAGTTGGAATTTTATTTGGGTGAGACTACAGCTAGTGTGCAGTGGATTGCAGGGTCAAACCTCCCTACGAATCAAACGATGATATGGTACAAGACCAACTTTGATGCCCCAAGTGGCAATGATCCAGTGGCTCTAAACCTTTTTGGCATGGGCAAGGGAGTAGCCTGGGTAAATGGAAAGAGTATTGGACGCTATTGGCCATCCTACATTGCTTCTCAGAGTGGTTGTACTGATTCATGTGACTATCGAGGAGCTTACTCTTCAAGTAAATGTCTAACAAATTGTGGCCAACCATCACAGAAGCTATATCATGTGCCTCGTTCTTGGATTCAGTCAACTGGTAATGTTTTGGTTCTCTTTGAAGAGCTGGGTGGAGATCCTACTCAAATATCCTTCGTGGCACGTTCTGTAGGAACTGTGTGTGCCCGAGTATCAGAGACACATCTTCCACCTGTAGGGTCATGGAAATTAAGTGCAACTAGTGGATTGAAAGTCAATAAACCAAAGGCAGAACTTCAGTTACATTGTCCATCATCTGGTCATCTCATAAAATCTATCAAGTTTGCGAGTTTTGGAACTCCCACAGGGCGCTGTGGAAGCTTCACATATGGCCATTGCAACACCAACAGTACAATGTCCATCATAGAAGAGGCATGCATTGGACGTGAGAGTTGCTCAGTTGAGGTTTCAATAGAGAAATTTGGAGATCCTTGTAGAGGCACTGTTAAGAACCTGGCAGTGGAAGCTAGCTGCAGTTGA___TATAGAATAGTACCTTTTTTAGTATTCTAGATGATGAAAATAAAAGTGAAGAAATAAAATATATAAATAGCAGGCAATTGTAATAAGTATCATATAACAAAGAATCCATGGGGTCCAAAAATAAGCATTCATGTAGTACATGACATT

Fln Alignment:

Contig5920___RFFQRGGTFQNYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVSQPKWGHLKELHKAIKLCETALVNAEANYTSFGSGLEAHVYSLGSGTCAAFLANINTQSDATVKFNGNSYHLPAWSVSILPDCKNVVFNTAKISSQTTSVQMNPANLILAGSNSIKGTDSGNATPWSWLHEQIGISGSNTFSKPGLLEQISTTVDASDYLWYTTSIQVDDDQPFLHGGTQPVLHVHSLGHALHVFINGEFXXXXXXXXXXSKITLQKVISLKSGKNIIDLLSVTVGLQNYGSFFDTWGAGITGPVTLQGFKDGEHNLSTQQWTYQIGLTGEQLEFYLGETTASVQWIAGSNLPTNQTMIWYKTNFDAPSGNDPVALNLFGMGKGVAWVNGKSIGRYWPSYIASQSGCTDSCDYRGAYSSSKCLTNCGQPSQKLYHVPRSWIQSTGNVLVLFEELGGDPTQISFVARSVGTVCARVSETHLPPVGSWKLSATSGLKVNKPKAELQLHCPSSGHLIKSIKFASFGTPTGRCGSFTYGHCNTNSTMSIIEEACIGRESCSVEVSIEKFGDPCRGTVKNLAVEASCS
A9NUR2_________________RFFQRGGTFQNYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVRQPKWGHLKELHKAIKLCEAALVNAESNYTSLGSGLEAHVYSPGSGTCAAFLANSNTQSDATVKFNGNSYHLPAWSVSILPDCKNVVFNTAKIGSQTTSVQMNPANLILAGSNSMKGTDSANAASWSWLHEQIGIGGSNTFSKPGLLEQINTTVDSSDYLWYTTSIQVDDNEPFLHNGTQPVLHVQSLGHALHVFINGEFAGRGAGSSSSSKIALQTPITLKSGKNNIDLLSITVGLQNYGSFFDTWGAGITGPVILQGFKDGEHDLSTQQWTYQIGLTGEQLGIYSGDTKASAQWVAGSDLPTKQPMIWYKTNFDAPSGNDPVALNLLGMGKGVAWVNGQSIGRYWPSYIASQSGCTDSCDYRGAYSSTKCQTNCGQPSQKLYHVPRSWIQPTGNVLVLFEELGGDPTQISFMTRSVGSLCAQVSETHLPPVDSWKSSATSGLEVNKPKAELQLHCPSSRHLIKSIKFASFGTSKGSCGSFTYGHCNTNSTMSIVEEACIGRESCSVEVSIEKFGDPCKGTVKNLAVEASCS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1355		12		87	0.992554
1356	12	87			0.992554
1358			87	12	0.992554
1483	16		83		0.994512
1485	80		20		0.995493
1589		25		75	0.996473
1591	20			80	0.995493
1595		75		25	0.996473
1724	16	83			0.994512
1725	16	83			0.994512
1727			16	83	0.994512
1728	83			16	0.994512
1857		20	80		0.995493
1858	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain