SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5916

Length: 1094 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5916

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1439	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GB98_CUCME	-	-	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	23%
Blast2go	pentatricopeptide repeat-containing protein	-	-	56%

Source	GOs	Term	Type	Identity
Blast2go	binding	GO:0005488	Molecular Function	56%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	56%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	56%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAN4

Fln msg: Distance to subject end: 19 aas, No stop codon before M and low homology subject, your sequence is longer than subject: 333 - 290

Fln protein: MRMVATSQAALDAAAERRRRKRKLRIEPPLNALQRNRDYARREAMSNRNSKLPEPINVLVGERLSLHNRIQTLCRAGKLEDATLGVKHATYSNCRPTIFTFNSVLGNLHRAGQHDNVVALYKFIKQAGVIPNLVTYNIVLSTHCERLDMEASFEMLKTIYEAEMTPSTVTFNHLMKAHFRLNKYEEVMRLFREMLEKCHGADPPTYAATIEGFVKGEAMQQAEELYLEMRRRGSIFSEPVFCNLIRGFFKAGEVQKALDVFAFIPEKFERTVMSYNAVMDGFCKAGQMQEAFEYLEKMGERNISPNGASYAVLMGGYIGRGELQEAERLLDQW

Protein Length: 334

Fln nts: GATCAGAGCTTTGACCATGTATTCCTTCTCGCCAATACGCACAATGCAGGGCGAGCCATTATCGCCATTATCGCGACAACATGGACGCGGGGC_-_ATGCGAATGGTGGCGACATCGCAGGCTGCCTTGGACGCAGCAGCGGAAAGGCGGCGCCGGAAGAGGAAGCTCCGCATCGAGCCACCCCTAAACGCTCTGCAACGTAACCGCGACTATGCCCGGAGGGAGGCCATGAGCAACAGGAACTCGAAGCTCCCTGAGCCCATCAATGTCCTCGTGGGTGAGCGCCTGAGCCTCCACAACCGCATCCAAACCCTATGTAGGGCCGGAAAGCTCGAGGATGCCACGCTCGGCGTCAAGCATGCCACGTACTCCAATTGTCGTCCCACCATCTTCACCTTCAACTCTGTTCTCGGCAACCTACACCGAGCAGGTCAGCACGATAACGTTGTTGCTCTTTATAAATTTATCAAACAAGCTGGTGTTATACCGAATCTCGTTACATATAACATAGTTTTGAGCACACATTGTGAGAGACTGGACATGGAGGCCTCGTTCGAGATGCTGAAAACCATCTATGAGGCTGAAATGACGCCCAGTACAGTGACTTTTAATCATTTAATGAAGGCCCATTTTAGGCTGAACAAGTATGAGGAGGTCATGAGGCTTTTCAGGGAAATGTTAGAGAAATGCCATGGGGCTGATCCTCCTACATACGCTGCTACTATTGAGGGTTTTGTGAAGGGGGAAGCAATGCAGCAAGCAGAGGAGCTGTACTTGGAGATGAGGAGACGGGGTTCGATCTTCAGCGAGCCGGTCTTTTGTAATTTAATTAGGGGATTTTTCAAGGCAGGAGAGGTTCAGAAGGCATTGGATGTGTTTGCCTTTATTCCGGAGAAGTTCGAACGGACTGTCATGTCATATAATGCTGTGATGGATGGGTTCTGCAAGGCTGGCCAAATGCAGGAGGCCTTTGAGTATTTGGAGAAGATGGGAGAGAGGAATATAAGCCCTAATGGTGCATCTTATGCAGTTTTAATGGGTGGGTATATTGGACGCGGTGAATTGCAGGAGGCTGAGAGGCTTTTGGATCAATGGTG

Fln Alignment:

Contig5916___KLPEPINVLVGERLSLHNRIQTLCRAGKLEDATLGVKHATYSNCRPTIFTFNSVLGNLHRAGQHDNVVALYKFIKQAGVIPNLVTYNIVLSTHCERLDMEASFEMLKTIYEAEMTPSTVTFNHLMKAHFRLNKYEEVMRLFREMLEKCHGADPPTYAATIEGFVKGEAMQQAEELYLEMRRRGSIFSEPV
D5AAN4_________________KLPE--NNLGPNATSYTILISGYITQGKLQEAEKLFRSMAEKGCIPDACVYNTLLDAYFKEGMFAEAEKLLEEMVTEHREPDSVTYTMLINEFTKQGKMEGALKIFANMIEAGLKPDVTVYNKWFGLLCKESKFDEAQKLFQRMVDGGQNPDVGTYDILTEGFGQEGRAEEAKKLFRDILEKGNLSEELV

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
448	33		66		0.997452
449	33			66	0.997452
455		33		66	0.997452
566	66		33		0.997452
600	20	80			0.995493
601	80			20	0.995493
661	25		75		0.996473
664			75	25	0.996473
735	33			66	0.997452
736		33		66	0.997452
737	33			66	0.997452
738			66	33	0.997452
912	40	60			1.0
916		60		20	0.99255
1008	20			80	0.995493
1009	80	20			0.995493
1011			80	20	0.995493
1012		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain