SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5912

Length: 1011 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5912

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27023	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	peptidyl-prolyl isomerase [Arabidopsis thaliana] sp\|Q9LDC0.1\|FKB42_ARATH RecName: Full=42 kDa peptidyl-prolyl isomerase; AltName: Full=Peptidyl-prolyl cis-trans isomerase; Short=PPIase; AltName: Full=Protein TWISTED DWARF 1; AltName: Full=Protein ULTRACUR	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	42 kda peptidyl-prolyl isomerase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	leaf development	GO:0048366	Biological Process	83%
Blast2go	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	83%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACH2

Fln msg: Distance to subject end: 24 aas, atg_distance in limit (1-15): atg_distance = 15, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 330 - 374

Fln protein: EYDTGNDKTINAENITSENAEVEEDDMLPPKVNTEVEVLHDKVTKQIIKEGSGNKPSRNSTCFLHYRAWAESTMHKFQDTWQEQQPLELVLGREKKELSGFAIGVAGMKAGERALLHVDWQLGYGEEGNFSFPNVPPRANLIYEAELIGFEEAKEGKARSDMTVEERIEAADRRRQQGNGLFKEDKLAEAMQQYEMALAYMGDDFMFQLFGKYKDMATAVKNPCHLNMAQCLLKLNRYEEAIGQCNMVLAEDEKNIKALFRRGKARATLGQTDDAREDFQKVRKFSPEDKAVIRELRLLAEHDKQVYQKQKEMFKGLFGQKPEQKPKKLH

Protein Length: 331

Fln nts: GAGAAGCAGGATATTTGTAAGAATATGACACAGGCAATGATAAAACAATTAATGCTGAAAATATCACATCCGAGAATGCTGAAGTTGAAGAAGATGATATGCTTCCTCCAAAAGTTAATACTGAAGTGGAAGTTCTTCATGATAAAGTTACAAAACAAATCATCAAGGAAGGGAGTGGAAACAAGCCTTCACGGAATTCGACATGCTTCTTGCACTACAGAGCGTGGGCTGAAAGCACTATGCACAAGTTTCAAGACACCTGGCAAGAACAACAGCCACTCGAACTGGTTTTGGGCAGAGAGAAAAAAGAATTGAGTGGCTTTGCCATTGGTGTGGCTGGCATGAAAGCTGGTGAACGTGCCTTGCTTCATGTGGACTGGCAATTAGGTTATGGGGAAGAAGGGAACTTCTCTTTTCCAAATGTACCACCTAGAGCCAATCTTATATATGAAGCTGAGCTTATTGGTTTTGAGGAAGCCAAGGAAGGTAAGGCACGTAGTGATATGACAGTAGAGGAGCGAATTGAAGCAGCAGATAGGAGACGGCAGCAAGGTAATGGACTTTTCAAGGAGGACAAATTAGCAGAGGCTATGCAACAGTATGAAATGGCCCTAGCATACATGGGAGATGATTTTATGTTTCAGTTGTTTGGAAAATACAAGGATATGGCAACTGCTGTGAAGAACCCTTGCCATCTTAATATGGCTCAATGTTTGTTGAAGCTGAACCGTTATGAAGAAGCCATTGGCCAGTGTAACATGGTATTAGCTGAGGATGAGAAGAATATCAAGGCTTTATTCAGACGTGGTAAGGCAAGAGCTACTCTAGGGCAGACTGATGATGCAAGAGAGGACTTTCAGAAGGTTCGGAAATTTTCTCCTGAAGATAAGGCAGTGATACGAGAGTTGCGTCTCCTTGCTGAACATGATAAGCAGGTTTATCAGAAACAGAAGGAGATGTTCAAGGGTCTTTTTGGGCAAAAACCAGAACAGAAACCAAAGAAGTTACACT

Fln Alignment:

Contig5912___EYDTGNDKTINAENITSENAEVEEDDMLPPKVNTEVEVLHDKVTKQIIKEGSGNKPSRNSTCFLHYRAWAESTMHKFQDTWQEQQPLELVLGREKKELSGFAIGVAGMKAGERALLHVDWQLGYGEEGNFSFPNVPPRANLIYEAELIGFEEAKEGKARSDMTVEERIEAADRRRQQGNGLFKEDKLAEAMQQYEMALAYMGDDFMFQLFGKYKDMATAVKNPCHLNMAQCLLKLNRYEEAIGQCNMVLAEDEKNIKALFRRGKARATLGQTDDAREDFQKVRKFSPEDKAVIRELRLLAEHDKQVYQKQKEMFKGLFGQKPEQKPKKLH
D5ACH2_________________ESDPDNDKTINGEKITSENAEVEEDDMLPPKVNSEVEVLHHKVTKQIIKAGNGNKPSQNSTCFLHYRAWAESTMHKFEDTWQEQQPLELVLGREKKELSGFAIGVASMKAGERALLHVDWQLGYGEEGNFSFPNVPPRANLIYEAELIGFEEAKEGKARSDMTVEERIEAADRRRQEGNELFKEDKLAEAMQQYEMALAYMGDDFMFQLFGKYRDMATAVKNPCHLNMAACLLKLNRYEEAIGHCNMVLAEDEKNIKALFRRGKARAALGQTDDAREDFQKVRKISPEDKAVIRELRLLAEHDKQVYKKQKEMYKGLFGQKPEHKPKRLH

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
444	20			80	0.995493
447	80		20		0.995493
588		16	83		0.994512
589	16		83		0.994512
590		83		16	0.994512
606	80	20			0.995493
609			80	20	0.995493
628		25	75		0.996473
632			80	20	0.995493
639		25		75	0.996473
640	25		75		0.996473
749	14			85	0.993533
752			85	14	0.993533
754		85		14	0.993533
756			85	14	0.993533
850	85			14	0.993533
851			85	14	0.993533
856		16	83		0.994512
867		33	66		0.997452
868	33		66		0.997452
877	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain