SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5910

Length: 1395 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5910 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13709	27/28

Source	Descriptions	Term	Type	Identity
AutoFact	flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	serine thronine protein	-	-	84%

Source	ECs	Term	Type	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	84%
Blast2go		EC:2.7.112.1	-	84%
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	84%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	84%
Blast2go	protein serine/threonine/tyrosine kinase activity	GO:0004712	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTN3

Fln msg:

Fln protein: MIEGEQYRTMEYEFTEGFYHRLGEGSDMSVESVGSLQTSNGGGSVSMSIMDSSVGSNNSRTTILMHPDLRTRTRTHGGSVAHSVAHNNIAAHTLGEDVLAQALMDDRYPTDGLEGYDDWTIDLRKLNMGPPFAQGAFGKLYKGTYNCEDVAVKILERPEDNTEKAQILEQQFTQEVRMLATLRHQNVVRFIGACKKPMVWCIVTEYAKGGSVRQSLARRQNRPVPLKLAVKQALDVARGMEYLQSLGFIHRDLKSDNLLIATDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYNFKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPQDCPPALAEIMSRCWDANPDVRPSFSEVVRMLEEAQGEIMTTVRKARFRCCMTLPLTAD*

Protein Length: 409

Fln nts: GGGTTTGATAGATTGACGGACTGTAAAGTACAGGCTATAAGGTTGGGGGTGGGCGTAAACAAATTATCTGAGA_-_ATGATAGAAGGAGAACAATATAGAACAATGGAATATGAATTCACTGAAGGGTTTTATCATAGGCTTGGAGAAGGCTCAGACATGTCTGTGGAGAGTGTGGGGAGCTTGCAGACCAGTAATGGAGGTGGGTCCGTGTCCATGTCCATTATGGACAGCAGCGTTGGCTCAAACAATTCGAGAACAACGATATTAATGCATCCCGATTTGAGAACCAGGACAAGAACCCATGGCGGATCCGTAGCCCACAGTGTGGCCCATAACAACATAGCCGCTCATACCCTTGGAGAAGATGTCCTTGCACAGGCGCTTATGGATGACAGGTATCCTACTGATGGTCTCGAGGGATATGATGACTGGACCATTGACTTAAGAAAACTCAACATGGGTCCTCCTTTTGCACAGGGGGCATTTGGTAAGCTTTACAAAGGTACCTACAATTGCGAGGATGTTGCAGTGAAGATCCTTGAGAGGCCGGAGGATAATACAGAGAAAGCCCAAATCTTGGAGCAGCAATTCACACAGGAAGTGAGGATGCTGGCCACTCTGAGGCATCAGAATGTGGTGAGGTTCATAGGGGCTTGTAAGAAACCTATGGTTTGGTGTATTGTTACAGAGTATGCCAAGGGGGGTTCTGTGAGGCAGTCTCTGGCAAGGAGACAGAACCGCCCAGTGCCTTTAAAATTAGCAGTGAAACAGGCATTGGATGTGGCAAGGGGGATGGAGTATCTGCAGAGTCTTGGGTTTATTCACAGGGATCTGAAGTCTGATAATCTGCTCATAGCTACAGACAAGTCTATCAAGATTGCGGATTTTGGGGTTGCTAGAATTGAAGTGCAGACGGAGGGCATGACTCCAGAAACTGGGACGTACCGCTGGATGGCGCCGGAAATGATTCAACATAGACCTTACAATTTCAAAGTAGATGTGTACAGTTTTGGAATTGTTTTGTGGGAACTTATAACAGGAATGCTTCCCTTCCAGAACATGACAGCGGTGCAGGCAGCTTTTGCTGTTGTCAACAAGGGTGTAAGGCCAATTATCCCCCAGGATTGTCCCCCAGCATTGGCAGAAATCATGTCCCGGTGCTGGGATGCCAATCCTGATGTGAGGCCTTCCTTCAGTGAAGTGGTCAGAATGCTGGAAGAAGCACAGGGTGAGATTATGACAACAGTTCGGAAAGCCAGGTTCCGATGTTGCATGACACTGCCTCTGACAGCTGACTAA___GCATTCATTTCCTTATATGTTCCTTGTATATTGGAATCGAGTATTTCGGACATTAACTATACATGCTTTTGTAAAATTCAATTGATTAGCACTATAAG

Fln Alignment:

Contig5910___MIEGEQYRTMEYEFTEGFYHRLGEGSDMSVESVGSLQTSNGGGSVSMSIMDSSVGSNNSRTTILMHPDLRTRTRTHGGSVAHSVAHNNIAAHTLGEDVLAQALMDDRYPTDGLEGYDDWTIDLRKLNMGPPFAQGAFGKLYKGTYNCEDVAVKILERPEDNTEKAQILEQQFTQEVRMLATLRHQNVVRFIGACKKPMVWCIVTEYAKGGSVRQSLARRQNRPVPLKLAVKQALDVARGMEYLQSLGFIHRDLKSDNLLIATDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYNFKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPQDCPPALAEIMSRCWDANPDVRPSFSEVVRMLEEAQGEIMTTVRKARFRCCMTLPLTAD
C0PTN3_________________MIEGEQYRTMEYEFTEGFYHRLGEASDMSVESVGSLQTSNGGGSVSMSIMDSSVGSNNSRTTILMHPDLRTRTRTHGGSVAHSVAHNNIAAHTLGEDVLAQALMDDRYPTDGLEEYDEWTIDLRKLNMGPPFAQGAFGKLYKGTYNNEDVAVKILERPENNIEKAQILEQQFTQEVKMLATLRHQNVVRFIGACKKPMVWCIVTEYAKGGSVRQSLAKRQNRPVPLKLAVKQALDVARGMEYLQSLGFIHRDLKSDNLLIATDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRSYNSKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPAIPQDCPPALAEIMSRCWDANPDVRPSFSEVVRMLEEAQGEIMATVRKARFRCCMTLPLTAD

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
393	83			16	0.994512
394	83		16		0.994512
395		83		16	0.994512
409	14			85	0.993533
410	14			85	0.993533
414	85			14	0.993533
1075	14	85			0.993533
1077		85		14	0.993533
1078	85		14		0.993533
1301	16		83		0.994512
1302		16		83	0.994512
1303	16			83	0.994512
1304		83		16	0.994512
1310	20			80	0.995493
1311		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain