SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5906

Length: 1342 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5906

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17320	36/37

Source	Descriptions	Term	Type	Identity
AutoFact	small GTP-binding protein [Mesembryanthemum crystallinum]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	rab family gtpase	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015599	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMT0

Fln msg:

Fln protein: MGCSASTPGKSSGLVRGSSLESSGVSDSKNLRIKLVLLGDSGVGKSCIVLRFVRGQFDPSSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYASLAPLYYRGASAAVIVYDITCMETFHKAQFWVKELQKHGNPNIVMALVGNKADLEESRSVGHDVAQAYADANGMFLIETSAKTADNINQLFEEIAKRLPRTTPLQT*

Protein Length: 204

Fln nts: AATGTTGTTGGATTAAATCTCAATAGCCCTCTAGCTTTGCCTTATTGTCAATGGATTTGTTGGCCATCGAGTCAACCATCTTAATCGCTGCTCTTTTAGTGTCGTTGTAAGTTCCATCCACTGCGGAAGATTGGCACATTGGGTTACGCACACGATTAAAAATAATGGGCTGCCTGCCTGTTTCACGGCGCTCATGTTACGAAATGTAGATATTGGTCTGATTAGTGTCCGCGAAGCTACCCACAGAGCTTTAAATCTTCCATCTTTTGGTATCCGCTTCAATTTATTGGCCATCTGAAATTGCAGGTAACGGAACTTCGCGGCCGTTGTAGGATAAATCTTCATCATACATAATAAATTCTCCATCAGACTCTCTATCCTTCTCGTTTAGCTGCATCGGTTGCAAAATCATTTTCAGCC_-_ATGGGATGCTCTGCTTCCACTCCAGGGAAATCATCAGGGCTTGTTCGTGGTTCAAGTCTTGAGAGCTCTGGCGTGTCAGACTCCAAAAACTTGCGGATAAAGTTGGTTCTTTTGGGTGACTCAGGTGTCGGTAAAAGTTGCATAGTTTTACGTTTTGTACGTGGCCAGTTTGACCCTTCATCAAAGGTGACAGTAGGAGCATCATTTTTATCGCAAACAATTGCATTGCAGGATTCTACTACTGTCAAGTTTGAGATATGGGATACTGCTGGTCAGGAAAGGTATGCTTCTTTAGCACCTCTTTATTACCGGGGTGCATCGGCTGCAGTGATTGTGTATGACATAACCTGTATGGAAACTTTTCATAAAGCCCAATTCTGGGTAAAGGAGCTTCAGAAACATGGGAATCCAAATATAGTAATGGCTCTAGTGGGAAACAAGGCCGATCTTGAAGAGAGCCGTTCTGTTGGACATGATGTTGCACAAGCTTATGCAGATGCCAATGGTATGTTCTTGATTGAGACTTCTGCAAAAACAGCAGACAACATAAACCAGCTATTTGAGGAAATTGCAAAGCGCTTACCCCGGACAACTCCATTGCAGACCTAG___GACCTTGCAGACCTAGGAGATTTATAGATGGTTGTGTTATTATATGCTAATCAATTCATGAGTTTATTACTTTATTTGTACAAATTAATCAAATGTACAATATGTGCTTTCAAAATTTTCTCTGAACATTCTATGCTAGAGAATCAGTGATGTATTTGGGTTGGTTTTGAAGAGCCTACCTCAATAAACTCTCATGTGAGATATTTACGATGGTCATGATATTTACGATGATTATTAGTTTTATATTTGCCAGCTTGTTTGGTTGACTGGTTGACTTTGGAAGGGGCAAGACACACAGTGATATGGAGACATT

Fln Alignment:

Contig5906___MGCSASTPGKXXXXXXXXXXXXXXXXXXKNLRIKLVLLGDSGVGKSCIVLRFVRGQFDPSSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYASLAPLYYRGASAAVIVYDITCMETFHKAQFWVKELQKHGNPNIVMALVGNKADLEESRSVGHDVAQAYADANGMFLIETSAKTADNINQLFEEIAKRLPRTTPLQT
A9NMT0_________________MGCSASSAGKSSGLVRGSTLENSGMSDSKNLRIKLVLLGDSGVGKSCIVLRFVRGQFDPSSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYASLAPLYYRGASAAVIVYDITCMETFHKAQFWVKELQKHGNPNIVMALVGNKADLEESRSVGHDVAQAYADANGMFLIETSAKTADNINQLFEEIAKRLPRTTPLQT

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1060	57		42		1.0
1110	20			80	0.995493
1111		20		80	0.995493
1112	20		80		0.995493
1114	80			20	0.995493
1185		16		83	0.994512
1230			85	14	0.993533
1243	16		83		0.994512
1244	83			16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain