SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5900

Length: 919 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5900

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1306	25/25

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SFG7_RICCO	-	-	30%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	32%
Blast2go	centromere protein	-	-	46%

Source	InterPros	Term	Type	e value	Identity
Sma3	KIP1-like	IPR011684	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
113	83	16			0.994512
115			83	16	0.994512
116	83			16	0.994512
134		80		20	0.995493
169	20			80	0.995493
171	20	80			0.995493
182	75	25			0.996473
185	75			25	0.996473
599	33		66		0.997452
603	66			33	0.997452
745	20			80	0.995493
746	80			20	0.995493
747	80		20		0.995493
805	14			85	0.993533
806		14	85		0.993533
809	85			14	0.993533
864	25			75	0.996473
865		25		75	0.996473
866	25	75			0.996473
868			75	25	0.996473
888	33		66		0.997452
889	66	33			0.997452
891		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
174	185	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain