SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5894

Length: 1953 nt

UniGene Fasta

>biog3_v1.0_unigene5894
AATGTCACAACAAAACCGGCGTACGGGAGTTCAATGTTTAACGATTCCCCTGAGCATAACGCAGCATACTAAAATGTGAGCGTAGCATTTCCTGGTTCATGCTTTCCACAGCTTGAACCACTCATAGCATTCTCAATTAATTCTGCATAGGTTCAATCATTACGCTGTCAATTCCGCGGCCTGTTTTGCCATGATATTTGAATTCGTCGAGAAATGGGGAAGCCCGTACTGAAGAGGGTACTTTCTCCAGAGGGAGGATATTCGCTGATAGAGAGGAGTACTCTACAGGTAGAGCTCGGCTTACATCCAGTGATCAAGTCCAAGAAGAAGCCTGGCTCTCGGCTATGGATGCACTTTGATGCAACTGGGAATTCGGAGGTGCTCGAATGCGATAAACAAATGATAATGAAGCGCGCATCAATTCCTGCGAGGGATTTGCGGATCCTGGGTCCCATCTTCTCCCATTCATCAAACATTCTCGCTAGGGAGAAAGCCATGGTGGTTAACTTGGAATTTATAAAGGCCATTGTCACTGCTGAAGAGGTCTTCTTGCTTGATCCTTTGAACCAAGCTGTTCTTCCATTTGTGGATCAACTCAGGCAACAACTTCCTCTCAAAATCCCATCAAGAATTCCGGAAAGCCATCATACAGATCAGCAAGAAAGACATGGCACCTCTGCCACAACTTCACCTGGACAGTGGCTGCCTGTCCCAGAGGCAGCAGAAGGGCTACAACGTGAACTTCCTTTTGAGTTCCGTGTGCTGGAAATTGCTTTGGAGGTGGTTTGCACCTACATGGACTCAGAGGTTGCAGAACTTGAACGACAGGCTTATCCTATATTGGATGAACTTGCCAGAAGTGTTAGTACCAAAAACCTTGAACGTGTGCGGAGCCTGAAAAGCAATCTTACTCGTCTCCTTGCTCGGGTCCAAAAGGTGAGAGATGAACTGGAACATCTTTTAGATGATGATGGCGACATGGCTGATTTGTATTTGACTCGGAAGTATCTCCAAAGTCAACAATGGGAAGCTTCAATAACAGCTGGAAGACAAAGTGCTCTAGCTATTACACCTTTTTCGTCTCACCTAAATTCTCGTCAGTTGAGCGCTTCTAGCTTTGTTACTAGTGTTGCTGGAGATGAAAACGATGTTGAAGATATTGAGATGCTGCTAGAGGCCTATTTCATGCAAGTTGATGGAACTCGCAACAAGATATTGTCGGTCCGTGAATACATTGACGACACGGAAGACTATGTGAATATTCAGCTTGATAACCAGCGTAATGAACTGATCCAGTTGCAGCTCACTCTGACTATAGCAACCTTCGCAATAACCCTTGCTACATTGATGGCAGGAACATTTGGAATGAATATTCATTGCCCACTCTACGACAAGCAGGGGGTGTTTTTCCCTTTCGTTGGATCTACTATGACACTCTGTCTCCTGCTTTTCTTTGCAATGTTAAGTTATGCCCGTTGGAAAGAACTACTTGGTACATAGGAAAAGATAAATTGCTTGAATACTTCGCTTTTAATGTGCATGGCTTCATAACTGAAGTGCTCGTGCGGCTGGAGTCTCTGTGTTTATTTTATTCAACAAATGGTGGTTTCAGTTTATATTGAGACCAAAATGAGGCCATTTTTTTTCACTTGGGGAAGGGAGTTGTATCACAGATTCTGGGGGTGATGATATATTGAGAACAGCTGTGTTATTTAGAAGAAATGGGCTTGTTACAGTGGAAAAATAGGATGCATGGCATCTCCTCATTACCCATGATCTAATTGATTTCTTTATCGAATTTAAGTCTATGTTTAGAACGATACTCTGGATCAAATAGGTCTATCGACCTTTTATATCGACACCTTTTAAGGAAATGCAAGTTTAGCAGGCGTGAATATGATTGCTTTTGCATTGGATCTTGTGCCAATTGCCAGACTACGTTCGTGTCTATGA

Ace file of the UniGene biog3_v1.0_unigene5894

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9461	38/38

Source	Descriptions	Term	Type	Identity
AutoFact	RNA splicing protein mrs2, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9SXF0_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	magnesium transporter mrs2-4-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	magnesium ion transport	GO:0015693	Biological Process	75%
Blast2go	transmembrane transport	GO:0055085	Biological Process	75%
Blast2go	magnesium ion transmembrane transporter activity	GO:0015095	Molecular Function	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAV9

Fln msg: your sequence is longer than subject: 429 - 233

Fln protein: MGKPVLKRVLSPEGGYSLIERSTLQVELGLHPVIKSKKKPGSRLWMHFDATGNSEVLECDKQMIMKRASIPARDLRILGPIFSHSSNILAREKAMVVNLEFIKAIVTAEEVFLLDPLNQAVLPFVDQLRQQLPLKIPSRIPESHHTDQQERHGTSATTSPGQWLPVPEAAEGLQRELPFEFRVLEIALEVVCTYMDSEVAELERQAYPILDELARSVSTKNLERVRSLKSNLTRLLARVQKVRDELEHLLDDDGDMADLYLTRKYLQSQQWEASITAGRQSALAITPFSSHLNSRQLSASSFVTSVAGDENDVEDIEMLLEAYFMQVDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIATFAITLATLMAGTFGMNIHCPLYDKQGVFFPFVGSTMTLCLLLFFAMLSYARWKELLGT*

Protein Length: 430

Fln nts: AATGTCACAACAAAACCGGCGTACGGGAGTTCAATGTTTAACGATTCCCCTGAGCATAACGCAGCATACTAAAATGTGAGCGTAGCATTTCCTGGTTCATGCTTTCCACAGCTTGAACCACTCATAGCATTCTCAATTAATTCTGCATAGGTTCAATCATTACGCTGTCAATTCCGCGGCCTGTTTTGCCATGATATTTGAATTCGTCGAGAA_-_ATGGGGAAGCCCGTACTGAAGAGGGTACTTTCTCCAGAGGGAGGATATTCGCTGATAGAGAGGAGTACTCTACAGGTAGAGCTCGGCTTACATCCAGTGATCAAGTCCAAGAAGAAGCCTGGCTCTCGGCTATGGATGCACTTTGATGCAACTGGGAATTCGGAGGTGCTCGAATGCGATAAACAAATGATAATGAAGCGCGCATCAATTCCTGCGAGGGATTTGCGGATCCTGGGTCCCATCTTCTCCCATTCATCAAACATTCTCGCTAGGGAGAAAGCCATGGTGGTTAACTTGGAATTTATAAAGGCCATTGTCACTGCTGAAGAGGTCTTCTTGCTTGATCCTTTGAACCAAGCTGTTCTTCCATTTGTGGATCAACTCAGGCAACAACTTCCTCTCAAAATCCCATCAAGAATTCCGGAAAGCCATCATACAGATCAGCAAGAAAGACATGGCACCTCTGCCACAACTTCACCTGGACAGTGGCTGCCTGTCCCAGAGGCAGCAGAAGGGCTACAACGTGAACTTCCTTTTGAGTTCCGTGTGCTGGAAATTGCTTTGGAGGTGGTTTGCACCTACATGGACTCAGAGGTTGCAGAACTTGAACGACAGGCTTATCCTATATTGGATGAACTTGCCAGAAGTGTTAGTACCAAAAACCTTGAACGTGTGCGGAGCCTGAAAAGCAATCTTACTCGTCTCCTTGCTCGGGTCCAAAAGGTGAGAGATGAACTGGAACATCTTTTAGATGATGATGGCGACATGGCTGATTTGTATTTGACTCGGAAGTATCTCCAAAGTCAACAATGGGAAGCTTCAATAACAGCTGGAAGACAAAGTGCTCTAGCTATTACACCTTTTTCGTCTCACCTAAATTCTCGTCAGTTGAGCGCTTCTAGCTTTGTTACTAGTGTTGCTGGAGATGAAAACGATGTTGAAGATATTGAGATGCTGCTAGAGGCCTATTTCATGCAAGTTGATGGAACTCGCAACAAGATATTGTCGGTCCGTGAATACATTGACGACACGGAAGACTATGTGAATATTCAGCTTGATAACCAGCGTAATGAACTGATCCAGTTGCAGCTCACTCTGACTATAGCAACCTTCGCAATAACCCTTGCTACATTGATGGCAGGAACATTTGGAATGAATATTCATTGCCCACTCTACGACAAGCAGGGGGTGTTTTTCCCTTTCGTTGGATCTACTATGACACTCTGTCTCCTGCTTTTCTTTGCAATGTTAAGTTATGCCCGTTGGAAAGAACTACTTGGTACATAG___GAAAAGATAAATTGCTTGAATACTTCGCTTTTAATGTGCATGGCTTCATAACTGAAGTGCTCGTGCGGCTGGAGTCTCTGTGTTTATTTTATTCAACAAATGGTGGTTTCAGTTTATATTGAGACCAAAATGAGGCCATTTTTTTTCACTTGGGGAAGGGAGTTGTATCACAGATTCTGGGGGTGATGATATATTGAGAACAGCTGTGTTATTTAGAAGAAATGGGCTTGTTACAGTGGAAAAATAGGATGCATGGCATCTCCTCATTACCCATGATCTAATTGATTTCTTTATCGAATTTAAGTCTATGTTTAGAACGATACTCTGGATCAAATAGGTCTATCGACCTTTTATATCGACACCTTTTAAGGAAATGCAAGTTTAGCAGGCGTGAATATGATTGCTTTTGCATTGGATCTTGTGCCAATTGCCAGACTACGTTCGTGTCTATGA

Fln Alignment:

Contig5894___MHFDATGNSEVLECDKQMIMKRASIPARDLRILGPIFSHSSNILAREKAMVVNLEFIKAIVTAEEVFLLDPLNQAVLPFVDQLRQQLPLKIPSRIPESHHTDQQERHGTSATTSPGQWLPVPEAAEGLQRELPFEFRVLEIALEVVCTYMDSEVAELERQAYPILDELARSVSTKNLERVRSLKSNLTRLLARVQKV
D5AAV9_________________MRFDVAGNSEVLECDKQTIMKRVSIPKRDLRILGPLFSQSSNILAREKAMVVNLDFIKAIVTAEEVFVLDPLNQAVLPFVDQLRQQLPLKSPSASQESHHTDQRERHGTSAETSPGEWLLDPEAAEGLQLELPFEFRVLEIALEVSCTYMDSDVAELEREAYPALDKLAKNVSTKNLENVRSLKRNLTCLLARVQKL

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
239	16			83	0.994512
241		83	16		0.994512
242	50			50	1.0
252	25		75		0.996473
253			75	25	0.996473
256			75	25	0.996473
259		25		75	0.996473
510		80		20	0.995493
623	75			25	0.996473
726			80	20	0.995493
727		80		20	0.995493
749	20			80	0.995493
751	20	80			0.995493
796	25	75			0.996473
797		75		25	0.996473
798			25	75	0.996473
799	75			25	0.996473
831	20	80			0.995493
832	80			20	0.995493
834			80	20	0.995493
1058	75			25	0.996473
1059	75			25	0.996473
1181	12		87		0.992554
1182	12		87		0.992554
1183		87		12	0.992554
1184		87	12		0.992554
1190	10	90			0.90298
1249		88		11	0.923564
1250			88	11	0.923564
1341	10	90			0.90298
1368	11		88		0.923564
1369		11	88		0.923564
1371	88			11	0.923564
1376		12		87	0.992554
1437	50		50		1.0
1439	50			50	1.0
1440		50		50	1.0
1505	33		66		0.997452
1506			66	33	0.997452
1507	66		33		0.997452
1508	66			33	0.997452
1679		25	75		0.996473
1791		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain