SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5885

Length: 751 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5885 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16493	14/14

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L51, putative n=1 Tax=Ricinus communis RepID=B9SX57_RICCO	-	-	9.0e-37	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	mitochondrial ribosomal protein l43	-	-	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein/NADH dehydrogenase domain	IPR007741	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
435	85		14		0.993533
483	12	87			0.992554
484	12	87			0.992554
486	87		12		0.992554
513		87		12	0.992554
577		14	85		0.993533
579		85		14	0.993533
598	16	83			0.994512
601		83		16	0.994512
602			83	16	0.994512
647	20		80		0.995493
648	20	80			0.995493
651	20	60		20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain