SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5871

Length: 878 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5871 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11362	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	DUF642 domain containing protein	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	uncharacterized protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	82%
Blast2go	response to karrikin	GO:0080167	Biological Process	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DUF642	IPR006946	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Sterol methyltransferase C-terminal	IPR013705	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVG9

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 292 - 408

Fln protein: CLVGRNSLPKWRTSGFVEYITSGHRQRDMLVVVPEGAHAVRLGNEASISQSIKVTRGSYYSLTFSAARTCAQFERLNVSVPPFSGDISIQTLYSSNGWDAYSWAFRALSSVVDVILHNPGVTEDPACGPVLDAVAIKELFPPRFTRFDLIKNGDFEEGPYMFPSSNSGVLLPPNVEDAISPLPGWIIESLKAVKYLDGAHFAVPQGRRAVELVAGKESAISQVVRTIPGRLYRLSFAVGDARNTCMGNMIVEAFAGRETVKVPFESKGAGTFKAATLAFTAIAPRTRVTFYI

Protein Length: 293

Fln nts: AATGTCTTGTGGGGCGGAACTCCTTACCGAAGTGGCGAACCAGTGGTTTTGTGGAGTACATAACATCTGGACATCGTCAGCGTGATATGTTGGTGGTCGTCCCCGAAGGAGCCCACGCTGTGAGACTGGGAAACGAGGCGTCCATCAGCCAGAGTATCAAGGTCACAAGGGGCTCCTATTACTCGCTTACATTTAGTGCGGCGAGGACTTGTGCACAGTTTGAGAGATTGAATGTCTCTGTTCCTCCGTTTTCTGGAGACATATCCATACAAACCCTGTACAGCAGCAATGGCTGGGATGCTTATTCCTGGGCATTCAGGGCTCTTTCCAGTGTAGTCGATGTTATTCTTCACAACCCCGGCGTTACAGAAGATCCGGCTTGCGGACCAGTGCTGGATGCAGTGGCAATCAAGGAGTTGTTTCCCCCTCGGTTCACAAGATTCGATCTCATAAAGAATGGCGATTTTGAGGAGGGCCCTTACATGTTCCCAAGCTCCAACTCCGGAGTGCTTCTTCCTCCCAACGTTGAAGATGCCATTTCTCCTCTGCCGGGATGGATCATCGAATCTCTGAAAGCTGTCAAGTACCTTGACGGGGCACATTTTGCAGTTCCGCAGGGCAGGAGAGCCGTGGAGCTCGTGGCCGGCAAGGAAAGCGCCATATCCCAGGTCGTCAGAACGATTCCCGGCAGATTGTACCGCTTGAGCTTTGCAGTGGGAGATGCCAGGAATACCTGCATGGGTAACATGATTGTGGAGGCATTTGCTGGGAGGGAAACAGTCAAGGTTCCCTTCGAATCAAAGGGAGCCGGAACCTTTAAGGCTGCAACACTCGCTTTCACTGCGATCGCCCCCAGGACTCGCGTTACTTTCTACATT

Fln Alignment:

Contig5871___NSLPKWRTSGFVEYITSGHRQRDMLVVVPEGAHAVRLGNEASISQSIKVTRGSYYSLTFSAARTCAQFERLNVSVPPFSGDISIQTLYSSNGWDAYSWAFRALSSVVDVILHNPGVTEDPACGPVLDAVAIKELFPPRFTRFDLIKNGDFEEGPYMFPSSNSGVLLPPNVEDAISPLPGWIIESLKAVKYLDGAHFAVPQGRRAVELVAGKESAISQVVRTIPGRLYRLSFAVGDARNTCMGNMIVEAFAGRETVKVPFESKGA-GTFKAATLAFTAIAPRTRVTFY
A9NVG9_________________DSLPGWNIDGMVEYINEGQKQGSMYLVVPEGKHAVRLGNEAQISQQINIQKGSTYSLTFSAARTCAQLESLNVSVPPSTRNVDLQTLYSIYGWDTYAWAFQAQSENVEVIFQNPGMEEDPTCGPILDAIALKQISTPDKLRDNAVINGDFEEGPWMFANETLGVLLPTNLDVATSSLPGWIMESSKAVRYIDSNHYKVPEGKRAIELLSGKEGIISQMVETDPGNKYTMSFLLGQAGDGCQEPMAVMAFAGDQADSFHFNNPPANGIYEPNNVTFTAKAARTRIAFY

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
504	16	83			0.994512
505	16		83		0.994512
506			83	16	0.994512
507	83		16		0.994512
620	12			87	0.992554
621		12	87		0.992554
622	12			87	0.992554
623		88		11	0.923564
633		85		14	0.993533
635			85	14	0.993533
668	16	83			0.994512
669	83	16			0.994512
671	83			16	0.994512
672	83			16	0.994512
678		83	16		0.994512
681		83		16	0.994512
697		12	87		0.992554
699			87	12	0.992554
720	14	85			0.993533
829		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain