SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5864

Length: 1095 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5864 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2079	25/25

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-6-phosphate 1-dehydrogenase n=3 Tax=Andropogoneae RepID=C5YD77_SORBI	-	-	80%
FL-Next	sp=Glucose-6-phosphate 1-dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	glucose-6-phosphate 1- chloroplastic-like	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glucose-6-phosphate dehydrogenase.	EC:1.1.1.49	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	86%
Blast2go	Glutathione metabolism	00480	86%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	86%
Blast2go	Biosynthesis of plant hormones	01070	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	glucose metabolic process	GO:0006006	Biological Process	86%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	86%
Blast2go	NADP binding	GO:0050661	Molecular Function	86%
Blast2go	glucose-6-phosphate dehydrogenase activity	GO:0004345	Molecular Function	86%
Blast2go	plastid	GO:0009536	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glucose-6-phosphate dehydrogenase	IPR001282	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT63

Fln msg: Distance to subject end: 152 aas, atg_distance in limit (1-15): atg_distance = 5, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 352 - 518

Fln protein: RVCHLPQGRDRVPTVSITVVGASGDLAKKKIFPALFALYYEDCLPKHFTIFGYARSKMTDAELRKMISGKLTCRIDKRANCEDKMDQFLQRCFYHSGQYNSEDNFKELDKKLKEHEAGRVANRLFYLSVPPNIFVDVVRCASRSSSSAIGWTRVIVEKPFGRDSESSAELTRGLKEYLTEEQIYRIDHYLGKELVENLSVLRFSNLVFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDSYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLQLEDAVTGQYKSHVKGDTRYPGYTDDNTVPKNSLTPTFAAAALFIDNARWDGVPFLMKAGKALHNRH

Protein Length: 353

Fln nts: AATGTATTTCCCCTTAGACTTACAGAGGGTGTTGTTGACGGGTCTGCCACCTCCCCCAGGGAAGGGATAGAGTACCAACTGTTAGCATCACGGTTGTTGGAGCCTCGGGTGACCTTGCCAAAAAGAAAATCTTCCCTGCACTCTTTGCTCTCTATTATGAAGACTGCCTACCCAAGCATTTTACCATATTTGGTTATGCCCGGAGTAAGATGACTGATGCAGAATTACGCAAGATGATCAGTGGTAAACTGACTTGCAGGATTGATAAGAGGGCAAATTGTGAAGACAAAATGGATCAGTTTTTACAGCGCTGCTTTTACCATTCAGGTCAATACAACTCGGAGGACAACTTCAAAGAGCTAGACAAAAAATTGAAGGAACATGAGGCAGGGAGAGTGGCGAATCGGTTGTTTTACTTGTCCGTTCCTCCAAACATTTTTGTGGATGTAGTGAGATGTGCTAGCCGCTCTTCATCTTCAGCTATTGGCTGGACTCGAGTTATTGTTGAAAAGCCTTTTGGTCGGGATTCCGAGTCATCTGCTGAGCTCACAAGAGGTCTGAAGGAGTACCTAACTGAAGAGCAGATTTACCGGATTGATCATTATTTGGGAAAGGAACTCGTTGAAAATCTCTCTGTCCTTCGGTTTTCCAATCTTGTTTTCGAGCCCTTGTGGTCAAGGCAATATATAAGGAACGTTCAACTGATTTTCTCTGAGGATTTTGGAACTGAAGGCCGAGGAGGGTACTTCGACAGCTATGGGATCATAAGGGACATAATGCAGAATCACCTGCTTCAAATATTAGCTCTTTTTGCGATGGAAACACCTGTTAGTTTGGATGCAGAAGACATTAGAAATGAAAAGGTCAAAGTGCTACGTTCAATGAGGCCCTTGCAACTTGAAGACGCGGTAACTGGACAATACAAGAGCCATGTTAAGGGAGATACAAGATACCCTGGATATACTGATGATAATACAGTGCCAAAAAATAGCCTTACTCCAACATTTGCAGCAGCGGCCCTTTTCATTGATAATGCCAGATGGGATGGTGTACCTTTCCTTATGAAAGCTGGGAAAGCTTTGCATAATAGACATT

Fln Alignment:

Contig5864___VSITVVGASGDLAKKKIFPALFALYYEDCLPKHFT-IFGYARSKMTDAELRKMISGKLT-CRIDKRANCEDKMDQFLQRCFYHSGQYNSEDNFKELDKKLKEHEAGR-----VANRLFYLSVPPNIFVDVVRCAXXXXXS-AIGWTRVIVEKPFGRDSESSAELTRGLKEYLTEEQIYRIDHYLGKELVENLSVLRFSNLVFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDSYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLQLEDAVTGQYKSHVKGDTRYPGYTDDNTVPKNSLTPTFAAAALFIDNARWDGVPFLMKAGKALHNR
C0PT63_________________LSIVVLGASGDLAKKKTFPALFNLYRQGFLQSEDVYILGYARTKLSKEGLRDRIREHLKPAKADSTKDPTEVISDFLKLVSYVSGTYDTEEGFLKLNEEIAKYEESKNGAEGPSRRLFYLALPPSVYPIVCKMIRHHCMNQGGGWTRVIVEKPFGKDLTSAEDLSNQLGELFSEEQIYRIDHYLGKELVQNLLVVRFANRLFLPLWNRDNIDNIQIVFREDFGTEGRGGYFDEYGIIRDIIQNHLLQILCLISMEKPVSLYPEHIRDEKVKVLQSVEPIRADDVVLGQYE----------GYTEDPTVPKDSKTPTFATVVLRINNERWDGVPFILKAGKALNSR

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
39			66	33	0.997452
116	25		75		0.996473
117	25		75		0.996473
118		75		25	0.996473
119	75		25		0.996473
120		75		25	0.996473
341	14			85	0.993533
343			85	14	0.993533
344		85	14		0.993533
396	12		87		0.992554
397	12			87	0.992554
401	87			12	0.992554
453	83	16			0.994512
455	83			16	0.994512
456		83		16	0.994512
464	14	85			0.993533
465	85			14	0.993533
526	11		88		0.923564
554	14		85		0.993533
557		85		14	0.993533
565		16	66		0.988813
567		83		16	0.994512
569		80		20	0.995493
597	60		40		1.0
662	66	33			0.997452
664	66			33	0.997452
810	10			90	0.90298
811	10			90	0.90298
897		87		12	0.992554
928		16	83		0.994512
929	16		83		0.994512
931	83			16	0.994512
974	33			66	0.997452
977	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain