SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5856

Length: 1134 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5856

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14579	32/33
SustainPine v2.0	sp_v2.0_unigene64623	1/33

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SP17_VITVI	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	rna binding	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXS9

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 38 aas, putative chimeric sequence, your sequence is shorter than subject: 267 - 376

Fln protein: M*KVGMPRGRGFIPRWRGRGFVGRGGRFLSRDDDDVDTLFHAFREQLVRDERRPGRAPRHIAGGPRRGSYRDYSRQKNAFYSRPAAPTRRGGDFANRTAGTRPVTYKDGYGPKRGSLLRGGARPLQSRRHSFPPAEDTYIGRLDRELEHSRMRQDSYAYDIIGHGTKRPYATLDENPRYDESGSRGHARTRYNYSEPVTSGTRYPSQQTVPSTYDRLAPDPIGTGTGLYSSIYPSRSDYYNTDLGGSSYSSSLYGGSRTLGGGSYY*

Protein Length: 268

Fln nts: AATGTAGAAAGTGGGGATGCCGCGAGGGAGAGGTTTCATACCCCGATGGCGTGGCCGAGGATTTGTTGGTCGTGGCGGAAGATTTTTATCCAGGGATGATGATGACGTGGATACATTGTTTCATGCTTTTCGTGAGCAACTTGTCCGTGATGAACGACGACCTGGGCGAGCCCCCCGGCATATTGCAGGTGGCCCAAGGAGGGGTTCTTACAGGGATTATTCAAGGCAAAAGAATGCATTTTATAGTAGACCTGCTGCTCCTACAAGACGAGGCGGAGACTTCGCTAACCGGACTGCTGGGACCAGACCTGTCACGTACAAGGATGGTTATGGACCAAAGCGTGGGAGCTTGCTACGTGGTGGAGCAAGACCTCTCCAGTCTCGAAGACACTCATTTCCACCCGCCGAAGATACATATATTGGTCGACTAGACAGAGAGTTGGAGCACAGCCGTATGAGGCAGGATTCATATGCATATGATATTATTGGCCATGGAACAAAACGTCCATATGCAACATTGGATGAAAATCCTCGATATGATGAGTCTGGAAGCAGAGGACATGCTAGGACCCGTTATAATTATTCAGAGCCTGTTACCAGTGGCACACGCTATCCAAGTCAGCAAACAGTTCCTAGTACATATGACCGACTTGCTCCAGATCCTATCGGGACTGGCACTGGACTCTATTCCTCTATTTATCCGAGCAGAAGTGATTACTATAATACCGATCTGGGTGGAAGTTCTTACTCATCATCTCTCTATGGAGGCAGCCGTACGTTGGGAGGTGGTTCTTATTACTAG___AGCTTAGGCTTTATAAGGTCAGTTGACACAGTTCTTGATGATTAAAATTTGGCATTGCGGTTAGATAAGTAGGAGGTTTAGCAAGGAGGGTTTGTTGCAGTTTGAATGTTCAACAGTGAAGATGGGGATGAAATTTAAATGACTTATTCGTTTTGAAGATCTGTCTATGGAAGCACAAATGAAACTTTGGATGTTTTTGAGCAAGAAAGAGACACCAGTGACTTCTGGATGTGAATTCTGGTCACCATTAACTCGAGGATATAACCAGTTTGGAATATATTGAATTGGAGAAGATAACTGAAGCACTCATCTCATTTATATATTTGAGTCCA

Fln Alignment:

Contig5856___RRGSYRDYSRQKNAFYSRPAAPTRRGGDFANRTAGTRPVTYKDGYGPKRGSLLRGGARP-----LQSRRHSFPPAEDTYIGRLDRELEHSRMRQDSYAYDIIGHGTKRPYATLDENPRYDESGSRGHARTRYNY
A9NXS9_________________RSNSKRDYGRRDEPYDDRQVRSSRSAPDFSTRAAAARRSSYRDSYANRGSGSYSDNAPPRGVSRTVSRRPPYP--EESYGRRIDKPYRDSRGRD----YDSVS-GSKRPYSAVEEPPRYGEPAMR-NSRARLDY

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
680	33	66			0.997452
683			66	33	0.997452
826		25	75		0.996473
879	20		80		0.995493
880		20	80		0.995493
881	20			80	0.995493
936	75	25			0.996473
974	20		80		0.995493
975	80	20			0.995493
977			80	20	0.995493
978		80		20	0.995493
1057	16			83	0.994512
1059	16		83		0.994512
1060	83			16	0.994512
1061			83	16	0.994512
1120	20			80	0.995493
1121		20		80	0.995493
1124	80			20	0.995493
1125		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain