SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5852

Length: 1203 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5852 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene876	27/27

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AAF76355.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAO42310.1\| unknown protein [Arabidopsis thaliana] gb\|AAP04120.1\| unknown protein [Arabidopsis thaliana] gb\|AEE74922.1\| transduc	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	probable u3 small nucleolar rna-associated protein 7-like	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	BING4, C-terminal domain	IPR012952	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPU3

Fln msg: Distance to subject end: 65 aas, No stop codon before M and low homology subject,

Fln protein: MDPEIKKYLRGKGVSLKNLKDKKLKGKLATKEALYKRSARNAAKVEQWLLPSEGGYLEAEGLEKTSNYKQEDIVREVDLLSSRKAFDIKLQEFGPYIVNYTLNGRYMVMAGRKGHLSIMDWKDLRLIKELQVRETVRDVKFLHNELFFATAQKKYIYIYDSSGTEIHCLKDHTDPLRLEFLPKHFLLASTNKYGILRYQDTSTGELISQHRTHLGRCDVMRMNPYNAVIALGHNNGTVTMWSPNMTTPLISMLCHHGPVTALAFDSQGHQFISAGNDGKIKIWDLRKYAPLHGYSCHAKSLDVSQRGLLAVGCESLVEIWRDALTTKQQRPYLKHRFVNGSQVQNLAFCPYEDIIAIGHSTGITSILVPGSGEPNFDTFVANPFETAKQRRDI

Protein Length: 394

Fln nts: AATGTATACCAAAGCTTCTGTAAG_-_ATGGATCCAGAAATCAAAAAATACTTGAGAGGAAAGGGTGTGTCTTTAAAGAATTTAAAAGATAAAAAACTCAAAGGCAAGTTGGCGACCAAGGAAGCATTGTATAAACGGTCTGCCAGAAATGCGGCTAAAGTTGAACAGTGGCTTCTACCAAGTGAGGGAGGGTACTTGGAGGCAGAAGGCTTAGAAAAGACAAGCAACTACAAACAAGAAGACATTGTTCGTGAGGTAGATCTTTTGAGTTCGAGGAAGGCATTTGACATTAAGCTACAAGAATTTGGACCATATATCGTGAATTACACTTTGAATGGTCGTTACATGGTAATGGCGGGTCGCAAGGGTCATCTATCGATTATGGATTGGAAAGATTTACGACTCATAAAGGAATTGCAGGTCAGAGAAACAGTGCGTGATGTGAAATTCCTGCATAATGAGCTATTTTTTGCGACTGCTCAGAAAAAGTATATCTATATCTATGACAGTTCTGGTACAGAAATCCACTGTCTCAAGGATCACACTGACCCACTAAGACTTGAATTTCTTCCAAAGCACTTTCTTCTGGCATCTACAAACAAGTATGGTATATTGCGATACCAGGATACGAGTACTGGTGAATTGATTTCCCAACACCGAACACATCTAGGTCGCTGTGATGTAATGCGTATGAATCCTTATAATGCAGTTATAGCTTTAGGACACAACAATGGCACTGTTACAATGTGGAGCCCTAATATGACCACTCCTCTCATCAGTATGCTATGTCACCATGGTCCTGTGACTGCATTGGCTTTTGATTCTCAAGGGCACCAATTTATTTCAGCAGGAAATGATGGAAAAATCAAAATATGGGATCTGAGAAAATATGCACCTTTGCATGGCTATTCCTGTCATGCAAAAAGCCTGGATGTCAGTCAAAGAGGTTTACTGGCTGTTGGATGTGAGTCACTAGTAGAAATTTGGAGAGATGCTCTAACAACGAAGCAGCAAAGGCCATATTTGAAACACCGTTTTGTAAATGGATCTCAGGTGCAAAACCTTGCATTCTGTCCATATGAGGATATAATTGCTATTGGACACTCTACAGGGATAACTTCCATTCTTGTACCAGGATCAGGGGAGCCTAACTTCGACACATTTGTTGCAAATCCATTTGAAACAGCTAAGCAGCGTCGTGACATT

Fln Alignment:

Contig5852___LKDHTDPL-RLEFLPKHFLLASTNKYGILRYQDTSTGELISQHRTHLGRCDVMRMNPYNAVIALGHNNGTVTMWSPNMTTPLISMLCHHGPVTALAFDSQGHQFISAGNDGKIKIWD
B8LPU3_________________LKGHTDSVVALSFSNDGLLLASGGLDGVVRIWDASTGNLIHVLDGPGGGIEWVRWHPKGQLVLAGSEDYTTWMWNADLGKCLSVYTGHSESVTCGDFTPDGKTICTGSADGSLRVWN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
931	11	88			0.923564
934		88		11	0.923564
956		87		12	0.992554
1016	14	85			0.993533
1019		85		14	0.993533
1183	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain