SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5846

Length: 1598 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5846 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4825	27/27

Source	Descriptions	Term	Type	Identity
AutoFact	primary-amine oxidase [Arabidopsis thaliana] gb\|AAM53275.1\| putative copper amine oxidase [Arabidopsis thaliana] gb\|AAN15348.1\| putative copper amine oxidase [Arabidopsis thaliana] gb\|AEC10126.1\| primary-amine oxidase [Arabidopsis thaliana]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	copper methylamine oxidase-like	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Primary-amine oxidase.	EC:1.4.3.21	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	89%
Blast2go	Tyrosine metabolism	00350	89%
Blast2go	Phenylalanine metabolism	00360	89%
Blast2go	beta-Alanine metabolism	00410	89%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	89%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	89%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	amine metabolic process	GO:0009308	Biological Process	89%
Blast2go	copper ion binding	GO:0005507	Molecular Function	89%
Blast2go	quinone binding	GO:0048038	Molecular Function	89%
Blast2go	primary amine oxidase activity	GO:0008131	Molecular Function	89%
Blast2go	peroxisome	GO:0005777	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Copper amine oxidase	IPR000269	-	-
Sma3	Copper amine oxidase, C-terminal	IPR015798	-	-
Sma3	Copper amine oxidase, N2-terminal	IPR015800	-	-
Sma3	Copper amine oxidase, N3-terminal	IPR015802	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKS0

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 532 - 788

Fln protein: CRGKVISSKVIEDVQPPMDAIEYADCESVVKDYPPFKEAMKKRGIDDMDLVMVDPWCVGYYKEEDAPSRRLARPLIFCRTESDCPMENGYARPVEGIHVLVDMQKMEVVEFEDQKLIPLPPPDPLRNYTAGETRGGVDRSDVKPLQIIQPEGPSFRVNGYHVEWQKWNFRIGFTPREGLVIYSIAYDDGSRGRRSVAHRLSFVEMVVPYGDPNGPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFFWHFYQDGKIEAEVKLTGILSLGALQHGESRKYGTMIAPGLYAPVHQHFFVARMDMAVDCKPGEPVNQVVELNVKVEEPGPNNIHSNAFYAEEQLLRTESQAKRDCNPLSARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLQHNLWVTQYHKDEQYPGGEFPNQNPRVGEGLPTWVKQNRNLEEADIVLWYVFGLTHVPRLEDWHI

Protein Length: 533

Fln nts: AATGTAGAGGCAAAGTTATTTCGTCGAAAGTTATTGAAGATGTTCAGCCACCTATGGATGCAATAGAGTATGCTGATTGTGAATCTGTTGTCAAAGATTATCCGCCTTTCAAGGAGGCAATGAAAAAGAGGGGAATTGATGATATGGATCTGGTGATGGTTGATCCATGGTGTGTTGGTTATTACAAGGAAGAGGATGCTCCTAGTCGAAGACTGGCTAGACCACTTATATTCTGCAGAACAGAAAGTGACTGCCCTATGGAAAATGGATATGCTCGACCAGTTGAAGGCATACATGTACTTGTTGATATGCAAAAAATGGAAGTAGTGGAGTTTGAAGATCAAAAGCTAATTCCCTTACCACCCCCAGATCCCCTCAGAAACTATACTGCAGGAGAAACACGTGGTGGAGTGGATCGGAGTGATGTCAAGCCACTGCAAATAATTCAGCCAGAAGGACCTAGTTTTCGTGTTAATGGCTACCATGTAGAATGGCAAAAGTGGAATTTTCGGATAGGTTTTACTCCGAGGGAGGGACTGGTGATCTATTCTATTGCATATGATGATGGCAGCAGAGGTCGGAGATCTGTGGCTCACCGTTTAAGTTTTGTGGAGATGGTTGTACCTTATGGGGATCCAAATGGTCCACATTATAGGAAAAATGCATTTGATGCTGGGGAGGATGGTCTGGGCAAAAACGCTCATTCTTTAAAGAAGGGGTGCGACTGTTTAGGCTATATCAAATACTTTGATGCACATTTCACAAATTTCACTGGAGGGGTAGACACTATTGAGAACTGTGTCTGCTTGCATGAGGAAGATCATGGAATTCTGTGGAAGCATCAAGATTGGAGGACAGGCTTAGCAGAAGTCAGAAGATCCAGGCGTTTAACAGTGTCATTCATATGCACTGTAGCAAATTATGAGTATGGTTTCTTTTGGCATTTTTATCAGGATGGTAAAATTGAAGCTGAAGTCAAGCTTACAGGGATTCTCAGTTTAGGTGCTCTACAACATGGAGAGTCAAGAAAGTATGGTACAATGATTGCTCCTGGGTTATATGCACCTGTGCACCAACACTTTTTTGTTGCTCGAATGGATATGGCTGTAGATTGCAAGCCTGGTGAACCAGTGAACCAGGTTGTGGAGTTAAATGTGAAAGTTGAAGAACCTGGACCCAATAATATTCATAGCAATGCATTTTATGCCGAGGAACAACTGCTACGAACTGAATCGCAAGCTAAGCGTGACTGTAATCCACTGTCTGCTCGGCACTGGATTGTCCGGAATACAAGGACTGTAAACAGAACAGGGCAGTTAACAGGCTACAAACTAGTCCCAGGCTCAAATTGCTTGCCATTGGCAGGGTCTGAAGCTAAGTTTCTTAGGCGAGCTGCGTTCTTACAGCATAACCTATGGGTAACTCAATATCATAAAGATGAACAATATCCAGGAGGTGAATTTCCTAATCAAAATCCTCGTGTTGGAGAAGGATTGCCTACTTGGGTGAAGCAAAATCGAAACCTTGAGGAGGCTGATATCGTTCTATGGTATGTTTTTGGCCTTACTCATGTTCCTCGTTTGGAGGACTGGCACATT

Fln Alignment:

Contig5846___RGKVISSKVIEDVQPPMDAIEYADCESVVKDYPPFKEAMKKRGIDDMDLVMVDPWCVGYYKEEDAPSRRLARPLIFCRTESDCPMENGYARPVEGIHVLVDMQKMEVVEFEDQKLIPLPPPDPLRNYTAGETRGGVDRSDVKPLQIIQPEGPSFRVNGYHVEWQKWNFRIGFTPREGLVIYSIAYDDGSRGRRSVAHRLSFVEMVVPYGDPNGPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFFWHFYQDGKIEAEVKLTGILSLGALQHGESRKYGTMIAPGLYAPVHQHFFVARMDMAVDCKPGEPVNQVVELNVKVEEPGPNNIHSNAFYAEEQLLRTESQAKRDCNPLSARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLQHNLWVTQYHKDEQYPGGEFPNQNPRVGEGLPTWVKQNRNLEEADIVLWYVFGLTHVPRLEDWHI
B8LKS0_________________RGKVISSKVIEDVQPPMDAMEYADCESVVKDYRPFREAMKKRGIDDMDLVMVDPWCVGYYMEEDAPSRRLARPLIFCRTESDCPLENGYARPVEGIHVLVDMQKMEVVEFEDQKLIPLPPPDPLRNYTAGETRGGVDRSDVKPLQIVQPEGPSFRVNGYHIEWQKWNFRIGFTPREGLVIYSVAYDDGSRGRRSVAHRLSFVEMVVPYGDPNGPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIDNCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFFWHFYQDGKIEAEIKLTGILSLGALQHGESRKYGTMIAPGLYAPVHQHFFVARMDMAVDCKPGEPVNQVVEVNVKVEEPGLNNIHNNAFYAEEELLRTESQAQRDCNPLSARHWIVRNTRTVNRTGQLTGYKLVPGANCLPLAGSEAKFLRRAAFLQHNLWVTQYHKDEQYPGGEFPNQNPRVGEGLHTWVKQNRNLEEADVVLWYVFGITHVPRLEDWPV

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
182	16	83			0.994512
183	16	83			0.994512
184		83		16	0.994512
185	83		16		0.994512
287	20		80		0.995493
288	20	80			0.995493
289		80		20	0.995493
290		80	20		0.995493
375	20	20		60	0.99255
377		20	80		0.995493
378	20			80	0.995493
379	75			25	0.996473
380		25	75		0.996473
382	75			25	0.996473
424	25		75		0.996473
425	25		75		0.996473
427		75	25		0.996473
428		75		25	0.996473
446	25	75			0.996473
449			25	75	0.996473
633	16	83			0.994512
634	16			83	0.994512
636		83	16		0.994512
637	83			16	0.994512
686	20		80		0.995493
690	80			20	0.995493
710		66		33	0.997452
783	20		80		0.995493
786		80	20		0.995493
969	33		66		0.997452
972		66	33		0.997452
973		66		33	0.997452
1363	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain