SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5842

Length: 891 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5842 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17425	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin domain 2; Thioredoxin fold n=1 Tax=Medicago truncatula RepID=A2Q5R3_MEDTR	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	thioredoxin-like 1- chloroplastic-like	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on a sulfur group of donors, With a disulfide as acceptor.	EC:1.8.4.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	GO:0016671	Molecular Function	72%
Blast2go	chloroplast membrane	GO:0031969	Cellular Component	72%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3		IPR017936	-	-
Sma3		IPR015467	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR012335	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
549	16		83		0.994512
551	16		83		0.994512
552		83		16	0.994512
553	83			16	0.994512
621	14			85	0.993533
625	85			14	0.993533
626	85			14	0.993533
634	87			12	0.992554
756	80			20	0.995493
759	33			66	0.997452
760		33	66		0.997452
761	33		66		0.997452
763			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain