SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5838

Length: 918 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5838

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16880	18/20
SustainPine v2.0	sp_v2.0_unigene62351	2/20

Source	Descriptions	Term	Type	Identity
AutoFact	Alanine-glyoxylate aminotransferase, putative n=1 Tax=Ricinus communis RepID=B9T1D1_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alanine--glyoxylate transaminase.	EC:2.6.1.44	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	86%
Blast2go	Glycine, serine and threonine metabolism	00260	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	86%
Blast2go	arginine catabolic process to glutamate	GO:0019544	Biological Process	86%
Blast2go	alanine-glyoxylate transaminase activity	GO:0008453	Molecular Function	86%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	86%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminotransferase class-III	IPR005814	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW66

Fln msg: Distance to subject end: 81 aas, your sequence is shorter than subject: 305 - 482

Fln protein: FDEDGRRYLDAYAGIVCISCGHCHPEIVDAIIKQTKLLQHANTIYLHHAVTDLAEALAAKMPGNLKVVFFVNSGTEANELATMMARLYTGNHDMISVRNGYHGNGSNTMGLTSQSKWKFNVVQSGVHHAVNPNPYRGIFGADGPQYAKDVQDIIDFGTTGRVAGFIAETIQGVGGAVELAPGYLRAAYDIVRKAGGVCISDEVQTGFGRMGSHYWGFETQGVIPDIVTVAKGIGNGLPIGAVVTTPEIAQVLTQRSHCVTFGGNPVSTAGGHAVLKVLDKEKRQEHSAVTGAHLINRLRELQDKT

Protein Length: 306

Fln nts: GTTTGATGAAGATGGGCGTCGATACCTGGATGCTTATGCAGGCATCGTCTGTATTTCCTGTGGGCACTGTCACCCTGAAATTGTTGATGCTATTATAAAGCAAACAAAGCTCCTGCAGCATGCTAACACAATATATCTTCATCATGCGGTCACAGATCTTGCAGAGGCATTAGCTGCAAAGATGCCAGGAAATCTTAAGGTAGTTTTCTTTGTAAATTCAGGTACGGAGGCAAATGAATTAGCTACGATGATGGCCCGGTTGTACACTGGTAACCATGATATGATTTCAGTGAGAAATGGATACCATGGAAATGGTTCTAACACAATGGGATTGACCAGTCAGAGCAAATGGAAATTTAACGTTGTGCAGAGTGGAGTGCATCACGCAGTCAATCCTAACCCATATCGAGGGATTTTTGGCGCTGATGGGCCACAGTATGCTAAAGATGTTCAAGATATTATCGACTTTGGAACCACTGGACGTGTTGCTGGCTTTATTGCAGAAACTATACAGGGTGTTGGTGGAGCAGTAGAACTAGCACCTGGATACTTGCGAGCAGCTTATGATATTGTACGGAAGGCTGGAGGTGTTTGTATATCTGATGAGGTTCAGACAGGATTTGGTCGTATGGGAAGTCATTACTGGGGCTTTGAAACACAAGGTGTTATCCCTGACATTGTAACTGTGGCCAAGGGTATTGGGAATGGCCTTCCTATTGGTGCTGTTGTGACAACTCCAGAAATTGCACAAGTTTTAACACAACGATCACACTGTGTTACTTTTGGTGGAAATCCAGTCAGTACTGCTGGCGGCCATGCTGTGCTAAAAGTTTTAGACAAAGAAAAACGACAAGAACATAGCGCTGTTACAGGTGCTCATCTAATCAACCGTTTAAGAGAACTTCAAGACAAAACATT

Fln Alignment:

Contig5838___FDEDGRRYLDAYAGIVCISCGHCHPEIVDAIIKQTKLLQHANTIYLHHAVTDLAEALAAKMPGNLKVVFFVNSGTEANELATMMARLYTGNHDMISVRNGYHGNGSNTMGLTSQSKWKFNVVQSGVHHAVNPNPYRGIFGADGPQYAKDVQDIIDFGTTGRVAGFIAETIQGVGGAVELAPGYLRAAYDIVRKAGGVCISDEVQTGFGRMGSHYWGFETQGVIPDIVTVAKGIGNGLPIGAVVTTPEIAQVLTQRSHCVTFGGNPVSTAGGHAVLKVLDKEKRQEHSAVTGAHLINRLRELQDK
A9NW66_________________FDEDGRRYLDAFAGIVCISCGHCHPEVVDTIVKQTKLLQHTTTIYLHHAVTELAEALAAKMPGNLKVVFFVNSGTEANELATMMARLYTGNHDMISVRNGYHGNSANTMGLTSQSKWKFNIVQSGVHHAVNPNPYRGVFGSDGPQYAKDVQDIIEFGTTGRVAGFIAETIQGVGGAVELAPGYLPAVYDSVRKAGGVCISDEVQTGFGRMGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIAQVLTQRSHCVTFGGNPVCTAGGHAVLKVLDKEKRQEHCAVVGAHLINRLKELQDK

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
527	20		80		0.995493
528		20	80		0.995493
530			80	20	0.995493
604	85		14		0.993533
608	14		85		0.993533
611			71	14	0.984337
622	66	33			1.0
662	87			12	0.992554
663		87	12		0.992554
664	87			12	0.992554
665		87		12	0.992554
666	87			12	0.992554
706			42	57	1.0
714			71	28	1.0
737		37	62		1.0
781		37	62		1.0
818		71		28	1.0
837	16		83		0.994512
838		16		83	0.994512
839	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain