SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5807

Length: 1477 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5807

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16109	44/44

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=1 Tax=Eriobotrya japonica RepID=D0EX73_9ROSA	-	-	72%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase S14, ClpP	IPR001907	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Peptidase S14, ClpP, active site	IPR018215	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNM1

Fln msg: your sequence is longer than subject: 315 - 158

Fln protein: MDISVLATSMYTKSPGMACTGLSVSNCNGNCRPESRRRRLSGCNKAFFDGGLRSHFVGKPFVGGSERSQLAGQGLFSVCRKLHLASPRSPGTRGIVTMVIPFQRGSAWEQPPPDLASYLFKSRIVYLGMSLVPAVTELIMAELLYLQYEDPEKPVYMYINSTGTTKDGEKLGYETEAFAVYDTMQYVKPPIFTLCIGNAWGEASLLLAAGAKGNRASLPSSTIMIKQPIAQVRGQATDIDLARKEIRNVKNDMVDLYARHTGHPKEKIEQDMRRPKYFSPQEAIEYGIIDKVIYSDKGTEDRGVVADLKKSQLI*

Protein Length: 316

Fln nts: AGTTTTTATGTCTCCCTGTGTAGGGATTTAGTTCGACATTAACACTGATCTCTTTTCCGTATGAAACGATTCATGTAATTACAGAGTTGGACATTGGAATAACAAGGGTTTCGGGAGGCAGGGGAGCTAAAACCCAGAA_-_ATGGATATATCCGTTCTAGCGACCTCTATGTACACAAAGAGCCCTGGTATGGCTTGCACGGGCCTCTCTGTCTCAAATTGCAATGGAAACTGCCGGCCTGAGAGCCGAAGGCGGAGGTTAAGTGGCTGCAACAAGGCCTTCTTCGATGGCGGATTGAGAAGCCACTTTGTAGGAAAACCTTTTGTTGGAGGAAGCGAGCGCAGTCAATTGGCTGGGCAAGGGCTCTTTTCTGTCTGCAGAAAGCTGCATTTGGCATCTCCTCGTTCTCCTGGCACCCGTGGCATTGTTACCATGGTTATTCCCTTCCAAAGAGGATCTGCATGGGAGCAGCCGCCTCCAGATCTAGCTTCATACTTGTTTAAAAGTCGAATTGTCTATTTGGGAATGTCACTTGTTCCAGCCGTAACAGAATTAATTATGGCAGAATTACTCTATCTGCAGTATGAGGACCCTGAGAAACCAGTCTACATGTATATCAATTCGACAGGTACTACAAAGGATGGGGAGAAGCTAGGATACGAGACTGAAGCTTTTGCAGTTTATGATACAATGCAGTATGTAAAGCCACCAATTTTTACTCTTTGTATTGGTAACGCATGGGGGGAAGCATCCTTGCTTTTGGCGGCTGGTGCAAAAGGAAATCGTGCTTCCTTGCCATCATCTACCATAATGATAAAACAGCCAATCGCACAAGTCCGAGGCCAAGCAACTGATATTGATCTTGCACGCAAAGAAATTAGAAATGTCAAGAACGATATGGTTGATCTTTATGCAAGACATACTGGACATCCCAAAGAAAAGATTGAACAAGATATGAGGAGACCAAAATATTTCAGTCCCCAAGAGGCCATTGAGTACGGGATAATTGATAAGGTTATTTATTCTGACAAAGGTACAGAGGACCGTGGTGTTGTTGCTGACCTTAAGAAATCACAGTTAATATAA___ATAGTGGAGGTTGGTTGTTTACAGCACCATAAACTTACTTCTACGATCAAGATTACATCAGGGATTATGGCATCCCACGAGGTTTCACTGGTGATGGCAGTGTCTTTCAATTTCAACCTATATTTACAGCTTTGTAATTGTAAGCGAGTAATTCTTGAAAACAGAAATATTTCCATTCTCCAGTACATTCTTTCCAGGCTGTTGAGATAGGGATAATGTTGGAGCAGCACTTAGCAAAATGGTGCCAGTGGCCACTGTTATTTACTGGCTAAAAGAATATACAAGGGTCATTTTATAGCTGAATCTTTCAACTCAGCAAGGGAATGCTATGCTAAATTGGATATTGCAAGGATTCATTAAAATTTAGCTCATTTGGTTCTTTTGGAATACATT

Fln Alignment:

Contig5807___MYINSTGTTKDGEKLGYETEAFAVYDTMQYVKPPIFTLCIGNAWGEASLLLAAGAKGNRASLPSSTIMIKQPIAQVRGQATDIDLARKEIRNVKNDMVDLYARHTGHPKEKIEQDMRRPKYFSPQEAIEYGIIDKVIYSDKGTEDRGVVADLKKSQLI
B8LNM1_________________MYINSTGTTKDGEKLGYETEAFAVYDTMRYVKPPIFTLCIGNAWGEASLLLAAGAKGNRASLPSSTIMIKQPIAQVRGQATDIDLARKEVRNVKNELVALYARHTGHPKEKIEQDIRRPKYFSPQEAIEYGIIDKVIYSDKGTEDRGVVADLKKSQLI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
189	20			80	0.995493
193			80	20	0.995493
1275	33			66	1.0
1277		66	33		1.0
1295		14		85	0.993533
1297			85	14	0.993533
1298			85	14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain