SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5785

Length: 382 nt

UniGene Fasta

>biog3_v1.0_unigene5785
GAATTTGCTACAACTTATGGATGAAGCTTATACTGGTTCCACCATTGTGGATCGTGGTGGGGATTCTGGAGATGAGAATATTGGATCTAGGGATGATATGGAAGCTTTATTTCTTGATCTTCTAAAGGATGAGAATGATGGTTTAACAGAGCGCCATTGGACATCACCACACATGGCTGCTTTACTACAAGCGGCCATGGGTTCGACACAATCAGAAAGGCTAAAACAGGCTTTCAAGATGGCTCCTCGTCTTCTTGAAGTATATTTCAGGATTGCATTGCGTGATGTGAATGATTCTCTGATTTGTGCATTAATACCAATAATCATGGCAAGAAATTCTACGTTGATTCCTGAAAAAAAGACTGCTTTTGAGATACACATT

Ace file of the UniGene biog3_v1.0_unigene5785

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8935	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	64%
Blast2go	protein kiaa0415-like	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	74%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7T0B9

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 127 - 569

Fln protein: NLLQLMDEAYTGSTIVDRGGDSGDENIGSRDDMEALFLDLLKDENDGLTERHWTSPHMAALLQAAMGSTQSERLKQAFKMAPRLLEVYFRIALRDVNDSLICALIPIIMARNSTLIPEKKTAFEIHI

Protein Length: 128

Fln nts: GAATTTGCTACAACTTATGGATGAAGCTTATACTGGTTCCACCATTGTGGATCGTGGTGGGGATTCTGGAGATGAGAATATTGGATCTAGGGATGATATGGAAGCTTTATTTCTTGATCTTCTAAAGGATGAGAATGATGGTTTAACAGAGCGCCATTGGACATCACCACACATGGCTGCTTTACTACAAGCGGCCATGGGTTCGACACAATCAGAAAGGCTAAAACAGGCTTTCAAGATGGCTCCTCGTCTTCTTGAAGTATATTTCAGGATTGCATTGCGTGATGTGAATGATTCTCTGATTTGTGCATTAATACCAATAATCATGGCAAGAAATTCTACGTTGATTCCTGAAAAAAAGACTGCTTTTGAGATACACATT

Fln Alignment:

Contig5785___LLQLMDEAYTGSTIVDRGGDSGDENIGSRDDMEALFLDLLKDENDGLTERHWTSPHMAALLQAAMGSTQSERLKQAFKMAPRLLEVYFRIALRDVNDSLICALIPIIMARNSTLIPEKKTAFEI
D7T0B9_________________LLALMDEAYTGSTIGDGGGDSESEDSNAIDVADPLFFDLLKDENDGLAERHWTSPGIAAALQAAINTPQSDRLKQSLNMAPRVLDMYFAIALRDVNNSLICALLPLIMTRNATIFPDKIFSYEV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
245		80		20	0.995493
345	25			75	0.996473
346		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain