SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5774

Length: 2521 nt

UniGene Fasta

>biog3_v1.0_unigene5774
AATGTCTGTCTATTGTTATTTTGTTATTTGCTTCTGTATGTGATGGGTTTTATTTACCTGGAAGCTATTTGCACACATACGCTAAAGGTGAAGAATTGACTGTTAAGGTCAATTCCCTGACATCAATAGAGACTGAACTGCCCTTTAGCTATTACAGTCTGCCTTACTGTAAACCCCCAAATGGCCCTAAAAAAAGTGCAGAGAATTTGGGAGAGCTTCTCATGGGTGACCAGATCGAGTCTTCCCCCTATATATTTCATATGAATACGAACGAGTCCTTTTATCTTTGCACTACTAAACCCTTAAATGAACAGGAAGTAAAGGTCTTGAAGCAAAGAATTGATGATCTGTACCAAGTGAATCTGATCCTTGACAATCTCCCAGTCATGAGGTACACCAAACAGAATGGCATAACGATCAAATGGACCGGGTTTCCCGTGGGTGGTTATGACCAAGAGAAGAACCACTATATAATAAATCACCTGAAATTTAAGGTGATGGTCCATGAGTATGAGGATTCTGGGTTCAATTCTCTGATCGGTGCCGGGGATGAAGGAATGGGGGCTGTTCCAGCGCAGGAGAGTGCCAAGCAAAAATCTGGTTTTGAAGTTGTTGGATTCGAGGTCGTTCCATGCACTGTTAAGCGAGATTCGGCTGCGATCTCGAAGAATAAGATGTATGATACAATCCCTACTGTTCAATGCGAGCGGGAAATGCAGCAGGTGATTAAGGAGCATGAACAGATCTCTTTCACTTATGAGGTGGTGTTTGAGAAATCTGATATCAGATGGCCTTCACGTTGGGATGCTTATTTGAAGATGGAGGGTGCGCGGGTACACTGGTTTTCTATCTTGAATTCCCTCATGGTGATCTCATTTTTGGCTGGAATAGTGTTTGTTATCTTTTTGAGAACTGTGAGAAGAGATCTGACCAAGTATGAAGAATTGGACAAGGAAGCACAAGCACAGATGGCCGAGGAGCTCTCTGGATGGAAGCTTGTAGTTGGCGATGTGTTTAGAGCTCCTAATCATTCAAAGCTTCTTTGTGTCATGGTGGGCGATGGTGTGCAAATTACAGGAATGGCAGTTGTCACAATACTCTTTGCAGCTCTTGGGTTCATGTCTCCTGCTTCAAGAGGAATGCTTCTGACAGGAATGATTTTGCTGTATCTTTTCCTTGGAATTGCAGCTGGTTACGTTGCTGTTAGAATGTGGAGGACCATACAGGGAGATTCTTCAGGTTGGAGATCTGTAGCATGGGCGGTTGCTTGTTTCTTCCCGGGGATGGTGTTTTTAATTCTTACCATTTTGAACTTTATTTTGTGGGGCAGTCACAGCACAGGAGCTATCCCTATTTCCCTTTTCTTCACCCTTTTATCCCTCTGGTTCTGCATCTCTGTGCCTCTCACGCTTTTGGGTGGATTTTTTGGGACCAGAGCTGAAGCCATACAATATCCAGTAAGAACTAACCAGATCCCTAGAGAAATCCCAGCCAGAAAATATCCATCATGGCTTCTTGTCCTGGGAGCAGGTACCCTGCCTTTTGGGACCCTCTTCATTGAGCTCTTCTTCATCATGTCTAGCATCTGGCTGGGAAGGTTCTATTATGTTTTTGGTTTCCTATTTGTTGTGCTTGTCCTACTTGTTATTGTCTGTGCTGAGGTCTCTGTGGTTCTTACATACATGCACCTTTGTGTGGAGGATTGGCAGTGGTGGTGGAAGTCATTCTTTGCATCTGGCTCAGTTGCTCTCTATGTTTTCCTATATGCAATCAACTATCTGGTTTTTGATCTTCGCAGCTTGAGTGGCCCAGTTTCTGCAGTGCTTTATCTTGGGTACTCCTTGATAATGGTGATTGCAATAATGCTTGCCACTGGTACCATTGGCTTTTTGACATCATTCTACTTCGTTCACTACCTCTTCTCTTCTGTCAAGATTGACTGAGGCCGATCTGGTGATAGTTTTTGCGAGGAGATGCGTGAAAGGATATCTTGTTTGGGACAAAGCAGGTTTTCTCTTATGGAATCTCTCTCTGATGAAATTATCAATTATAAAAGGAGAATTGCGAAAGAGGATACTGTGCTCGTAGACTGAAGCAGGGCTTTCCTTGAAAGCCTTGTATTGGGATTCAATTTATCTTATTTTACGTGAACATTTAGGAATGTTTTGAATATATCTTTGCATCTTACGTCGAAGGTAGCACTGCTCTGTCCTCTTCTGTATCCAGTTTTTATTTGAATAATGTTTCTTTAATATTGTATAACTGACAGAGCTAAGTTTAGGGGTTTCTATGGAGAGGTATTTCGGGGATATTCCCTCCTTACAAGCAAAAGGTTGATCAGGATTTGTCATCATATTTAGTTTCGAGTATATCGGATGATTAGAGGAGCAGATGCATAGCACAGTCTTCTGTTTTTATTTAAAATTGTTTAGAAATTATTCACTGTCCAGGGACAATGCCATGGATTTATTGATTTTACTGTCAAATTGGATAATGCAGATTGTTTTTCCTAATGTACATT

Ace file of the UniGene biog3_v1.0_unigene5774

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21923	97/98

Source	Descriptions	Term	Type	Identity
AutoFact	endomembrane family protein 70 [Arabidopsis thaliana] dbj\|BAB10022.1\| endosomal protein-like [Arabidopsis thaliana] gb\|AED93935.1\| endomembrane family protein 70 [Arabidopsis thaliana]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	transmembrane 9 superfamily member 4-like	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	86%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nonaspanin (TM9SF)	IPR004240	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWV0

Fln msg: atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is shorter than subject: 647 - 664

Fln protein: CLSIVILLFASVCDGFYLPGSYLHTYAKGEELTVKVNSLTSIETELPFSYYSLPYCKPPNGPKKSAENLGELLMGDQIESSPYIFHMNTNESFYLCTTKPLNEQEVKVLKQRIDDLYQVNLILDNLPVMRYTKQNGITIKWTGFPVGGYDQEKNHYIINHLKFKVMVHEYEDSGFNSLIGAGDEGMGAVPAQESAKQKSGFEVVGFEVVPCTVKRDSAAISKNKMYDTIPTVQCEREMQQVIKEHEQISFTYEVVFEKSDIRWPSRWDAYLKMEGARVHWFSILNSLMVISFLAGIVFVIFLRTVRRDLTKYEELDKEAQAQMAEELSGWKLVVGDVFRAPNHSKLLCVMVGDGVQITGMAVVTILFAALGFMSPASRGMLLTGMILLYLFLGIAAGYVAVRMWRTIQGDSSGWRSVAWAVACFFPGMVFLILTILNFILWGSHSTGAIPISLFFTLLSLWFCISVPLTLLGGFFGTRAEAIQYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWLGRFYYVFGFLFVVLVLLVIVCAEVSVVLTYMHLCVEDWQWWWKSFFASGSVALYVFLYAINYLVFDLRSLSGPVSAVLYLGYSLIMVIAIMLATGTIGFLTSFYFVHYLFSSVKID*

Protein Length: 648

Fln nts: A_-_ATGTCTGTCTATTGTTATTTTGTTATTTGCTTCTGTATGTGATGGGTTTTATTTACCTGGAAGCTATTTGCACACATACGCTAAAGGTGAAGAATTGACTGTTAAGGTCAATTCCCTGACATCAATAGAGACTGAACTGCCCTTTAGCTATTACAGTCTGCCTTACTGTAAACCCCCAAATGGCCCTAAAAAAAGTGCAGAGAATTTGGGAGAGCTTCTCATGGGTGACCAGATCGAGTCTTCCCCCTATATATTTCATATGAATACGAACGAGTCCTTTTATCTTTGCACTACTAAACCCTTAAATGAACAGGAAGTAAAGGTCTTGAAGCAAAGAATTGATGATCTGTACCAAGTGAATCTGATCCTTGACAATCTCCCAGTCATGAGGTACACCAAACAGAATGGCATAACGATCAAATGGACCGGGTTTCCCGTGGGTGGTTATGACCAAGAGAAGAACCACTATATAATAAATCACCTGAAATTTAAGGTGATGGTCCATGAGTATGAGGATTCTGGGTTCAATTCTCTGATCGGTGCCGGGGATGAAGGAATGGGGGCTGTTCCAGCGCAGGAGAGTGCCAAGCAAAAATCTGGTTTTGAAGTTGTTGGATTCGAGGTCGTTCCATGCACTGTTAAGCGAGATTCGGCTGCGATCTCGAAGAATAAGATGTATGATACAATCCCTACTGTTCAATGCGAGCGGGAAATGCAGCAGGTGATTAAGGAGCATGAACAGATCTCTTTCACTTATGAGGTGGTGTTTGAGAAATCTGATATCAGATGGCCTTCACGTTGGGATGCTTATTTGAAGATGGAGGGTGCGCGGGTACACTGGTTTTCTATCTTGAATTCCCTCATGGTGATCTCATTTTTGGCTGGAATAGTGTTTGTTATCTTTTTGAGAACTGTGAGAAGAGATCTGACCAAGTATGAAGAATTGGACAAGGAAGCACAAGCACAGATGGCCGAGGAGCTCTCTGGATGGAAGCTTGTAGTTGGCGATGTGTTTAGAGCTCCTAATCATTCAAAGCTTCTTTGTGTCATGGTGGGCGATGGTGTGCAAATTACAGGAATGGCAGTTGTCACAATACTCTTTGCAGCTCTTGGGTTCATGTCTCCTGCTTCAAGAGGAATGCTTCTGACAGGAATGATTTTGCTGTATCTTTTCCTTGGAATTGCAGCTGGTTACGTTGCTGTTAGAATGTGGAGGACCATACAGGGAGATTCTTCAGGTTGGAGATCTGTAGCATGGGCGGTTGCTTGTTTCTTCCCGGGGATGGTGTTTTTAATTCTTACCATTTTGAACTTTATTTTGTGGGGCAGTCACAGCACAGGAGCTATCCCTATTTCCCTTTTCTTCACCCTTTTATCCCTCTGGTTCTGCATCTCTGTGCCTCTCACGCTTTTGGGTGGATTTTTTGGGACCAGAGCTGAAGCCATACAATATCCAGTAAGAACTAACCAGATCCCTAGAGAAATCCCAGCCAGAAAATATCCATCATGGCTTCTTGTCCTGGGAGCAGGTACCCTGCCTTTTGGGACCCTCTTCATTGAGCTCTTCTTCATCATGTCTAGCATCTGGCTGGGAAGGTTCTATTATGTTTTTGGTTTCCTATTTGTTGTGCTTGTCCTACTTGTTATTGTCTGTGCTGAGGTCTCTGTGGTTCTTACATACATGCACCTTTGTGTGGAGGATTGGCAGTGGTGGTGGAAGTCATTCTTTGCATCTGGCTCAGTTGCTCTCTATGTTTTCCTATATGCAATCAACTATCTGGTTTTTGATCTTCGCAGCTTGAGTGGCCCAGTTTCTGCAGTGCTTTATCTTGGGTACTCCTTGATAATGGTGATTGCAATAATGCTTGCCACTGGTACCATTGGCTTTTTGACATCATTCTACTTCGTTCACTACCTCTTCTCTTCTGTCAAGATTGACTGAGGCCGATCTGGTGATAGTTTTTGCGAGGAGATGCGTGAAAGGATATCTTGTTTGGGACAAAGCAGGTTTTCTCTTATGGAATCTCTCTCTGATGAAATTATCAATTATAAAAGGAGAATTGCGAAAGAGGATACTGTGCTCGTAGACTGAAGCAGGGCTTTCCTTGAAAGCCTTGTATTGGGATTCAATTTATCTTATTTTACGTGAACATTTAGGAATGTTTTGAATATATCTTTGCATCTTACGTCGAAGGTAGCACTGCTCTGTCCTCTTCTGTATCCAGTTTTTATTTGAATAATGTTTCTTTAATATTGTATAACTGACAGAGCTAAGTTTAGGGGTTTCTATGGAGAGGTATTTCGGGGATATTCCCTCCTTACAAGCAAAAGGTTGATCAGGATTTGTCATCATATTTAGTTTCGAGTATATCGGATGATTAGAGGAGCAGATGCATAGCACAGTCTTCTGTTTTTATTTAAAATTGTTTAGAAATTATTCACTGTCCAGGGACAATGCCATGGATTTATTGATTTTACTGTCAAATTGGATAATGCAGATTGTTTTTCCTAATGTACATT

Fln Alignment:

Contig5774___DGFYLPGSYLHTYAKGEELTVKVNSLTSIETELPFSYYSLPYCKPPNGPKKSAENLGELLMGDQIESSPYIFHMNTNES-FYLCTTKPLNEQEVKVLKQRIDDLYQVNLILDNLPVMRYTKQNGITIKWTGFPVGGYDQEKNHYIINHLKFKVMVHEYEDSGFNSLIGAGDEGMGAVPAQ-ESAKQKSGFEVVGFEVVPCTVKRDSAAISKNKMYDTIPT-VQCE---REMQQVIKEHEQISFTYEVVFEKSDIRWPSRWDAYLKMEGARVHWFSILNSLMVISFLAGIVFVIFLRTVRRDLTKYEELDKEAQAQMAEELSGWKLVVGDVFRAPNHSKLLCVMVGDGVQITGMAVVTILFAALGFMSPASRGMLLTGMILLYLFLGIAAGYVAVRMWRTIQG-DSSGWRSVAWAVACFFPGMVFLILTILNFILWGSHSTGAIPISLFFTLLSLWFCISVPLTLLGGFFGTRAEAIQYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWXXXXXXXXXXXXXXXXXXXIVCAEVSVVLTYMHLCVEDWQWWWKSFFASGSVALYVFLYAINYLVFDLRSLSGPVSAVLYLGYSLIMVIAIMLATGTIGFLTSFYFVHYLFSSVKID
A9NWV0_________________NAFYLPGSYPHSYPQGSDLWVKVNSLTSVETELPYSYYSLPFCKPLDGVKDMAENLGELLMGDRIESSPYRFRMNDNESEIFLCNTTVLGAEQLKVLKHRIDNLYQVNLMLDNLPAIRYTKQDNFSLRWTGFPVG-FRVDKTHYIFNHLKFTVLVHRYDGDSVSKAIGAGD-GIDTMPVDSKDGTMTPGFMVVGFEVVPCSYQHNIEASSNLKMYGKYPTAIDCSPSGRGPYQAVKEGHPIAFSYEVAFVESDIKWPSRWDAYLKMEGARVHWFSILNSLMVISFLAGIVLVIFLRTVRRDLTRYEDLDKEAQ--MNEELSGWKLVVGDVFRSPAHSELLCIMVGDGVQILGMAVVTILFAAFGFMSPASRGTLITGMLFFYLVLGIAAGYVAVRMWRTLKGGDHRGWKSISWRVACFFPGIAFLILTVLNFLLWGSQSTGAIPISLFIVLLALWFCISVPLTLLGGYFGAKAPHIEYPVRTNQIPREIPPQKYPSWMLVLGAGTLPFGTLFIELFFIMSSIWLGRVYYVFGFLFIVLILLVVVCAEVSLVLTYMHLCVEDWKWWWKAFFASGSVSIYIFLYSINYLVFYLRSLSGPVSAALYIGYSLLMVFAIMLATGTIGLLASFWFVHYLFSSVKLD

SNPs (tot: 68)

Position	A %	C %	G %	T %	Probability
87	28		71		1.0
88	28		71		1.0
91	71			28	1.0
146	12			87	0.992554
149		87		12	0.992554
201	14		85		0.993533
202	85			14	0.993533
426	90			10	0.90298
564	28		71		1.0
566	12			62	1.0
567	37		62		1.0
569			12	87	0.992554
570		83		16	0.994512
584	16			83	0.994512
585		16	83		0.994512
586	20	80			0.995493
587		80		20	0.995493
588	80			20	0.995493
710	22		77		0.999999
711			77	22	0.999999
712			77	22	0.999999
792	14		85		0.993533
794	14	85			0.993533
837	80		20		0.995493
859	33			66	0.997452
861	33	66			0.997452
862		66		33	0.997452
1078			90	10	0.90298
1079			90	10	0.90298
1096	90			10	0.90298
1151	15	84			0.999986
1152	84			15	0.999986
1154	7		76	15	0.999983
1284		10	90		0.90298
1287			90	10	0.90298
1349	11			88	0.923564
1350	11	88			0.923564
1351		88		11	0.923564
1352		88	11		0.923564
1376	10			90	0.90298
1379		90	10		0.90298
1380		90		10	0.90298
1464	85	14			0.993533
1466		85		14	0.993533
1505	11	88			0.923564
1579	12		87		0.992554
1580		12		87	0.992554
1581	12	87			0.992554
1583	87			12	0.992554
1609		20		80	0.995493
1610	20		80		0.995493
1634	12	87			0.992554
1635	12			87	0.992554
1687			87	12	0.992554
1754	10			90	0.90298
1837	18		81		0.999994
1838		18		81	0.999994
1840		81		18	0.999994
1899	6	73		20	1.0
2074	10		90		0.90298
2075			90	10	0.90298
2076	90		10		0.90298
2091	50	50			1.0
2126	14		85		0.993533
2127		14	85		0.993533
2154		83	16		0.994512
2155	83			16	0.994512
2347		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain