SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5755

Length: 1171 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5755

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6090	9/11
SustainPine v2.0	sp_v2.0_unigene69345	1/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cu_bind_like multi-domain protein	-	-	8.0e-12	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	protein	-	-	0.0	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	anchored to membrane	GO:0031225	Cellular Component	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cupredoxin	IPR008972	-	0.0	-
Sma3	Plastocyanin-like	IPR003245	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWZ4

Fln msg: your sequence is shorter than subject: 281 - 353

Fln protein: KIETGDSLVFKYQPIFHDVYMFPNKKAFDYCNFTDSIVLDEGKSGSFTWIPSKLGVYYFSCNKSVEGAITHCEAGQKVTIRVSAKSGMQSPLGSPSLAPPVPSPSVTPSSRLTPLPIFPPSSTPSSPISLPIFPPSNAPSSPMFPPSPEQNPTIINVPSLSPSLSPTSDFTPAASPSSATPMALSPNEVLVPTAASVPISESPPPSLLVRSPFSSPTSSPFISSTPEPLSQVGADASSILPPVSPSKETSAAGTSGVQKAWGFGLFLSTMTSVVSLMLFV*

Protein Length: 282

Fln nts: AAAAAATTGAAACAGGAGATTCCCTTGTTTTCAAGTATCAACCAATATTTCACGATGTGTACATGTTTCCCAATAAGAAGGCCTTCGATTACTGCAATTTCACAGACTCCATTGTGCTAGACGAGGGAAAATCTGGATCATTCACGTGGATTCCTTCAAAGCTGGGTGTGTACTATTTTTCTTGTAATAAGTCAGTAGAAGGTGCTATAACCCACTGTGAAGCAGGCCAGAAGGTAACAATCAGAGTATCAGCAAAGTCAGGCATGCAGAGTCCATTGGGTTCTCCTTCTCTTGCACCACCAGTGCCTTCTCCTAGTGTGACTCCATCATCTAGGCTTACACCTTTGCCTATATTTCCTCCTTCTAGCACCCCCAGCAGTCCTATATCTTTGCCTATTTTTCCGCCGTCTAATGCACCCAGCAGTCCTATGTTTCCTCCATCTCCTGAACAGAACCCAACAATCATTAATGTACCCTCTTTGTCTCCGTCCCTAAGTCCAACATCAGACTTCACACCAGCTGCAAGTCCATCCTCAGCCACTCCTATGGCATTATCACCTAATGAAGTTCTAGTCCCCACTGCAGCATCTGTACCAATTTCAGAAAGCCCTCCTCCATCATTACTAGTTCGCTCTCCTTTTTCATCTCCAACCAGCAGCCCTTTTATCAGCAGCACTCCTGAGCCTCTCTCACAAGTTGGGGCAGATGCCAGCAGCATATTACCACCTGTCAGTCCAAGTAAAGAAACGAGTGCAGCAGGGACCTCTGGGGTACAAAAGGCCTGGGGATTTGGATTATTTCTCTCAACTATGACATCTGTTGTATCTCTAATGCTCTTTGTTTAG___TTCTTATACATCATTTCAGGCTACCTCTAATCAGTAGTCCTGAAGATTTGGAACATAGCTCTAAACTATGACATCGTCTGCATCTTATAATGCTCTTGATTTTAGTTCGTATGCATCATTTCAGGGTTTCAACCCACAACCCTCAACCTTCAATGCATTATCATTATCATTAAGAAAGCATGATGCCTTCTGATCAATGAGAAATATTATCTGTATCAATTATGGGTTACTTATGGGTTACTACAATTTATCCTCCACTTTGCAGTTCTAAGTTATCCTAATTATTGTTGAGATGAAAATTTCTGTATGGTACATTATACTACATT

Fln Alignment:

Contig5755___KIETGDSLVFKYQPIFHDVYMFPNKKAFDYCNFTDSIVLDEGKSGSFTWIPSKLGVYYFSCNKSVEGAITHCEAGQKVTIRVSAKSGMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPSSP---------------MFPPSPEQNPTIINV-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEVLVPTAASVPISESPPPSLLVRXXXXXXXXXXXXXXXXEPLSQVGADASSILPPVSPSKETSAAGTSGVQKAWGFGLFLSTMTSVVSLMLFV
A9NWZ4_________________KIQTGDSLVFKYQPMFHDVYMLPTKKAFDYCNFTDSIVLDEGKSGSFTWIPSKQGVYYFSCNRSIEGAITHCEAGQKVTIRVSAKSGMQ-SPSVSPTLAPLVPSPSVTPSSRLTPLPIFPPSSTPSSPVSLPIFSPSIPSSPMSLPSFSPSSTPRSPMFPPSPEQSPTIPHVPSLSPSLSPTSDFTPAASPSSAPSSKALSPNGVLVPTAAPTPISGSPSPSLSVRSPFSSPTNSPLISSTPEPLSQVGADASSTFPPFSPSKEMSGAGTSVDLKAWRFGLFLSAMTSSASLMLMV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
81			66	33	0.997452
861	25			75	0.996473
865			75	25	0.996473
866			75	25	0.996473
899	33			66	0.997452
900		33		66	0.997452
903	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain