SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5748

Length: 444 nt

UniGene Fasta

>biog3_v1.0_unigene5748
TGGGCCTTCTCACTGCCCATTTGGGTGTTGAGAATTCCAATTTCACTCCTGGAGGCCGGAATATGGGTTTTCTTCACTTACTATGTCATTGGTTACGACCCTTATGTTGGAAGGTTGTTTCGCCAGTATCTTCTGCTAGTCTGTGTCCATCAGATGGCCACTTCGCTGTTTCGATTCATCGCATCATTGGGTCGAACCATGATCGTAGCCAACACATTTGGTTCTTTTGCATTGGTCATTATTTTGCTTCTCGGTGGATTTCTTCTCTCACGACATGACGTCAAAAGCTGGTGGATATGGGGTTACTGGATATCTCCTCTCATGTATGCCCAGAATGCCATCTCTGTGAACGAGTTCTTAGGTCACATTTGGAACAAGCCAACCTTGAGCACTAATGGCTCTGTCTTGAGCGATAAAACATTGGGTAAATATATTCTAACCTCG

Ace file of the UniGene biog3_v1.0_unigene5748

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16760	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Pleiotropic drug resistance protein TUR2; Short=Protein Turion 2 emb\|CAA94437.1\| PDR5-like ABC transporter [Spirodela polyrhiza]	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW55

Fln msg: Distance to subject end: 33 aas, your sequence is shorter than subject: 148 - 471

Fln protein: WAFSLPIWVLRIPISLLEAGIWVFFTYYVIGYDPYVGRLFRQYLLLVCVHQMATSLFRFIASLGRTMIVANTFGSFALVIILLLGGFLLSRHDVKSWWIWGYWISPLMYAQNAISVNEFLGHIWNKPTLSTNGSVLSDKTLGKYILTS

Protein Length: 149

Fln nts: TGGGCCTTCTCACTGCCCATTTGGGTGTTGAGAATTCCAATTTCACTCCTGGAGGCCGGAATATGGGTTTTCTTCACTTACTATGTCATTGGTTACGACCCTTATGTTGGAAGGTTGTTTCGCCAGTATCTTCTGCTAGTCTGTGTCCATCAGATGGCCACTTCGCTGTTTCGATTCATCGCATCATTGGGTCGAACCATGATCGTAGCCAACACATTTGGTTCTTTTGCATTGGTCATTATTTTGCTTCTCGGTGGATTTCTTCTCTCACGACATGACGTCAAAAGCTGGTGGATATGGGGTTACTGGATATCTCCTCTCATGTATGCCCAGAATGCCATCTCTGTGAACGAGTTCTTAGGTCACATTTGGAACAAGCCAACCTTGAGCACTAATGGCTCTGTCTTGAGCGATAAAACATTGGGTAAATATATTCTAACCTCG

Fln Alignment:

Contig5748___VLRIPISLLEAGIWVFFTYYVIGYDPYVGRLFRQYLLLVCVHQMATSLFRFIASLGRTMIVANTFGSFAXXXXXXXXXXXXSRHDVKSWWIWGYWISPLMYAQNAISVNEF
A9NW55_________________VVELPYTLFQTILYGLITYSVIGFHWSVDKFFWYLFVTLCHFLYFTYYGMLTVAISPNAQVAAVISSAFYSIFNLFSGFLITRPQLPRWWVWYYWICPLAWTLNGLVTSQY

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
197	33	66			0.997452
198		66		33	0.997452
199	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain