SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5741

Length: 996 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5741

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene264	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9T7V7_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	potassium transporter	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%
Blast2go	membrane	GO:0016020	Cellular Component	81%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: Separated hits, possible frame ERROR between 242 and 479, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning,

Fln protein: CLVRGVPAVFGQFLTSLPAIHSIIVFVCIKYVPVPVVPQDERFLFRRICPRDYNMFRCVARYGYKDVRKEHYEAFEQLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSADEDPSLEYDLSSLREAKESGVVYLVGHGDVKARKDSWFLKKLVINYFYAFMRANCRAGPANLSVPHTNLLQVSMTYTV*

Protein Length: 241

Fln nts: A_-_ATGTCTTGTTCGTGGAGTACCTGCAGTTTTTGGGCAGTTTTTAACAAGCCTTCCAGCAATACATTCGATCATCGTATTTGTTTGTATAAAGTATGTACCAGTTCCTGTTGTGCCACAAGATGAGCGTTTTCTTTTTAGGAGAATTTGTCCAAGGGACTATAACATGTTTCGATGTGTGGCTAGATATGGGTACAAAGACGTTCGCAAGGAACATTATGAGGCCTTTGAACAATTACTATTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTCTGCAGATGAAGATCCAAGTCTTGAGTATGATCTTTCATCTTTGCGTGAAGCTAAAGAATCAGGAGTTGTGTATCTTGTTGGTCATGGAGATGTCAAGGCTAGAAAGGATTCATGGTTTCTTAAGAAACTGGTTATAAACTACTTCTATGCTTTCATGAGGGCGAACTGCAGGGCAGGCCCTGCAAACCTCAGTGTGCCTCACACCAATCTCTTGCAGGTTAGCATGACATATACTGTCTGACTTGAAGGTTTCCATGAATCAGACATGCTGAATGTTTTTCAAGGACCAAGTCACAACATCAATATGGTGATGGATACCAAAGATTTCCTTGAAGGTGGCCGAGATGAAGTGAATTTTAATGTGAAGTTAATAATCATAAGTTCTGTTGTCGACCAAGGTCTTTCATTACTTGGTCCTTTATTTTGTTTGATAGAGAACGATAGACATTCCTACGATTAATTACTGGTATTTGTGAACATAGACACCAATTCTTTTCAATGAAGGTGATAGGTGGT

Fln Alignment:

Contig5741___LVRGVPAVFGQFLTSLPAIHSIIVFVCIKYVPVPVVPQDERFLFRRICPRDYNMFRCVARYGYKDVR--KEHYEAFEQLLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSADEDPSLEYDLSSLREAKESGVVYLVGHGDVKARKDSWFLKKLVINYFYAFMRANCRAGPANLSVPHTNLLQVSMTYTV
D5A8F8_________________LVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFE--DQLILxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSPDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLEVGMVYLV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
40	33			66	0.997452
41	33			66	0.997452
43			33	66	0.997452
44	66			33	0.997452
493			83	16	0.994512
494	83		16		0.994512
542		83		16	0.994512
608	80	20			0.995493
610		80		20	0.995493
612	25		75		0.996473
613		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain