SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5728

Length: 1976 nt

UniGene Fasta

>biog3_v1.0_unigene5728
AATGTTGTCTAGATTGTGATTGTTTTTTTGTGAGATGGGGAACACAGCGGAGGAGAACAGTTCTCTGTTTCCGATCTTCATACTGGCGATTATGGTCTTATCGCTGGTGCCATACACTATCCATCGAGTGGCGAATGCGGCGTGGAAGAAGGCCAGGAGCATTCACTGCCACTGTTCCGTCTGCTTACGCTCTGGAAAATACCGCACATCCGTCGCCAAGAAGATCTCGAAATTTTCAACATGTAGCAACTTGATGCTCCTTCTGCTGTGGGCGATAATGCTTTTTCTGGTATACTATGTCAAGCATATTACTCGCGAGGTTCAACCTTTTGAGCCATTTGCAATTCTTGGACTGGATCCTGCAGCTTCTGAAGCAGAGATCAAGAAGGCTTATCGAAGACTTTCCATCCAATACCATCCAGATAAAAATCCAGATCCAGAGGCCAACAAGTATTTTGTAGAGTATATATCAAAAGCCTATCAGGCTCTTACTGACCCTGCAGCTCGAGAGAATTTTGCAAAGTATGGCCATCCAGATGGTAGACAGGGACTTCAAATGGGTATAGCCCTACCTGAGTTCTTGCTAAATGTACATGGAGCTTCTGGGGGGATTCTCTTGCTTGGGATTGTTGGTGTGTGTATTTTACTGCCCCTTATGACAGCAGTCATATATCTTTCTCGTTCCTCAAAATATACTGGCAATCATGTGATGCATCAGACACTTTCAACCTATTATTACTTCATGAAGCCCTCTCTAGCACCCAGCAAAGTGATGGATGTTTTTATTAAGGCAGCAGAATATGTGGACATGCCTGTTCGTCGTAGTGATGATGAACCTCTCCAGAAGCTCTTTATGGTTGTTCGAAGTGAACTGAATTTTGATCCAAAAAACCTGAAGCAAGAGCAAGCAAAGTTTTGGAAAAAGTATCCAGCTTTGGTCAAAACGGAGTTATTGTTGTTGGCACAGTTGACTCGTGAATCAACATCTGTGCCCTTTGGTCTGCAGTCTGACTTTAGACATGTGTTGCAACTTGCCCCCCGCCTACTTGAAGAACTTATGAAGATGGCAGTTGTAGCACGCAATGATCAGGGACATGGCTGGTTAAGACCTGCCCTTGGTGTAATGGAGCTCTCACAGAGTATTATTCAGGCTGTACCACTCAGTGCCAGGAAAGTTGCAGAACGGAATGCTAATGCCGGGGTCCTCACTGAGGGGATCGCTCCATTTTTGCAGCTACCTCACTTTAGTGAGGCTGTTGTAAAGAAACTTGGTCGCAAAAAGGTGCGCACTTTTCAGGACCTGAGGGAAATGACTCCCAATGACCGTATGGATTTGCTAATTCAATCAGGTTTTTCTGATACAGAGGCCAGGGATGTGGAGGTAGTTCTTGACATGATGCCTTCCATAACAATTGATGTTACATGTGAGACTGAAGGTGAAGAAGGCATTCAAGAAGGTGACATTGTTACATTGCGAGCTTGGATTTCATTGAAACGTGGAAATGGTCTTACTGCTGCTCTGCCTCATGCACCTTACTTCCCATTCCATAAAGAAGAAAATTATTGGTTATTGCTTGCTGATCCTGTCTCTAATAATGTGTGGGTTTCACAAAAGGTCAGTTTTATGGATGAGGCTACTGCAGTTACTGCTGCTTCCAAAGCTATTCAAGAATCTTTGGAAGGTTCTGGTGCAAGTGTTAAGGAGATAAATGTAGCAGTTAAGGAAGCTGTTGAGAAAGTGAAGAGCGGCTCAAGGTTGGTCATGGTTAAATTCCAAGCACCAGCTGAAAGCACGTACAATCTCACAGCTTATTGCTTATCTGATACTTGGATAGGCTGTGACAAGAAGGTGATTGTAAAGTTCAAGGTAGCAAAGCGTAGCAGAGCTGGCACAAGGGCCATGATTGCTGAAGAGGGACCTATTCAAGAAGATGGAATTGAAGAGGAAGAAAATGAAGAAGATGAAGGCACACATT

Ace file of the UniGene biog3_v1.0_unigene5728

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2359	43/44

Source	Descriptions	Term	Type	Identity
AutoFact	translocation protein SEC63 [Arabidopsis thaliana] ref\|NP_001031306.2\| translocation protein SEC63 [Arabidopsis thaliana] ref\|NP_001117623.1\| translocation protein SEC63 [Arabidopsis thaliana] dbj\|BAE99700.1\| putative DnaJ protein [Arabidopsis thaliana] g	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	translocation protein sec63	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	84%
Blast2go	response to stress	GO:0006950	Biological Process	84%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	84%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	84%
Blast2go	integral to endoplasmic reticulum membrane	GO:0030176	Cellular Component	84%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Sec63 domain	IPR004179	-	-
Sma3	Oxygen oxidoreductase covalent FAD-binding site	IPR006093	-	-
Sma3		IPR015609	-	-
Sma3		IPR018127	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A855

Fln msg: Distance to subject end: 47 aas, your sequence is longer than subject: 647 - 164

Fln protein: MGNTAEENSSLFPIFILAIMVLSLVPYTIHRVANAAWKKARSIHCHCSVCLRSGKYRTSVAKKISKFSTCSNLMLLLLWAIMLFLVYYVKHITREVQPFEPFAILGLDPAASEAEIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPAARENFAKYGHPDGRQGLQMGIALPEFLLNVHGASGGILLLGIVGVCILLPLMTAVIYLSRSSKYTGNHVMHQTLSTYYYFMKPSLAPSKVMDVFIKAAEYVDMPVRRSDDEPLQKLFMVVRSELNFDPKNLKQEQAKFWKKYPALVKTELLLLAQLTRESTSVPFGLQSDFRHVLQLAPRLLEELMKMAVVARNDQGHGWLRPALGVMELSQSIIQAVPLSARKVAERNANAGVLTEGIAPFLQLPHFSEAVVKKLGRKKVRTFQDLREMTPNDRMDLLIQSGFSDTEARDVEVVLDMMPSITIDVTCETEGEEGIQEGDIVTLRAWISLKRGNGLTAALPHAPYFPFHKEENYWLLLADPVSNNVWVSQKVSFMDEATAVTAASKAIQESLEGSGASVKEINVAVKEAVEKVKSGSRLVMVKFQAPAESTYNLTAYCLSDTWIGCDKKVIVKFKVAKRSRAGTRAMIAEEGPIQEDGIEEEENEEDEGTH

Protein Length: 648

Fln nts: AATGTTGTCTAGATTGTGATTGTTTTTTTGTGAG_-_ATGGGGAACACAGCGGAGGAGAACAGTTCTCTGTTTCCGATCTTCATACTGGCGATTATGGTCTTATCGCTGGTGCCATACACTATCCATCGAGTGGCGAATGCGGCGTGGAAGAAGGCCAGGAGCATTCACTGCCACTGTTCCGTCTGCTTACGCTCTGGAAAATACCGCACATCCGTCGCCAAGAAGATCTCGAAATTTTCAACATGTAGCAACTTGATGCTCCTTCTGCTGTGGGCGATAATGCTTTTTCTGGTATACTATGTCAAGCATATTACTCGCGAGGTTCAACCTTTTGAGCCATTTGCAATTCTTGGACTGGATCCTGCAGCTTCTGAAGCAGAGATCAAGAAGGCTTATCGAAGACTTTCCATCCAATACCATCCAGATAAAAATCCAGATCCAGAGGCCAACAAGTATTTTGTAGAGTATATATCAAAAGCCTATCAGGCTCTTACTGACCCTGCAGCTCGAGAGAATTTTGCAAAGTATGGCCATCCAGATGGTAGACAGGGACTTCAAATGGGTATAGCCCTACCTGAGTTCTTGCTAAATGTACATGGAGCTTCTGGGGGGATTCTCTTGCTTGGGATTGTTGGTGTGTGTATTTTACTGCCCCTTATGACAGCAGTCATATATCTTTCTCGTTCCTCAAAATATACTGGCAATCATGTGATGCATCAGACACTTTCAACCTATTATTACTTCATGAAGCCCTCTCTAGCACCCAGCAAAGTGATGGATGTTTTTATTAAGGCAGCAGAATATGTGGACATGCCTGTTCGTCGTAGTGATGATGAACCTCTCCAGAAGCTCTTTATGGTTGTTCGAAGTGAACTGAATTTTGATCCAAAAAACCTGAAGCAAGAGCAAGCAAAGTTTTGGAAAAAGTATCCAGCTTTGGTCAAAACGGAGTTATTGTTGTTGGCACAGTTGACTCGTGAATCAACATCTGTGCCCTTTGGTCTGCAGTCTGACTTTAGACATGTGTTGCAACTTGCCCCCCGCCTACTTGAAGAACTTATGAAGATGGCAGTTGTAGCACGCAATGATCAGGGACATGGCTGGTTAAGACCTGCCCTTGGTGTAATGGAGCTCTCACAGAGTATTATTCAGGCTGTACCACTCAGTGCCAGGAAAGTTGCAGAACGGAATGCTAATGCCGGGGTCCTCACTGAGGGGATCGCTCCATTTTTGCAGCTACCTCACTTTAGTGAGGCTGTTGTAAAGAAACTTGGTCGCAAAAAGGTGCGCACTTTTCAGGACCTGAGGGAAATGACTCCCAATGACCGTATGGATTTGCTAATTCAATCAGGTTTTTCTGATACAGAGGCCAGGGATGTGGAGGTAGTTCTTGACATGATGCCTTCCATAACAATTGATGTTACATGTGAGACTGAAGGTGAAGAAGGCATTCAAGAAGGTGACATTGTTACATTGCGAGCTTGGATTTCATTGAAACGTGGAAATGGTCTTACTGCTGCTCTGCCTCATGCACCTTACTTCCCATTCCATAAAGAAGAAAATTATTGGTTATTGCTTGCTGATCCTGTCTCTAATAATGTGTGGGTTTCACAAAAGGTCAGTTTTATGGATGAGGCTACTGCAGTTACTGCTGCTTCCAAAGCTATTCAAGAATCTTTGGAAGGTTCTGGTGCAAGTGTTAAGGAGATAAATGTAGCAGTTAAGGAAGCTGTTGAGAAAGTGAAGAGCGGCTCAAGGTTGGTCATGGTTAAATTCCAAGCACCAGCTGAAAGCACGTACAATCTCACAGCTTATTGCTTATCTGATACTTGGATAGGCTGTGACAAGAAGGTGATTGTAAAGTTCAAGGTAGCAAAGCGTAGCAGAGCTGGCACAAGGGCCATGATTGCTGAAGAGGGACCTATTCAAGAAGATGGAATTGAAGAGGAAGAAAATGAAGAAGATGAAGGCACACATT

Fln Alignment:

Contig5728___MDEATAVTAASKAIQESLEGSGASXXXXXXXXXXXXXXXXSGSRLVMVKFQAPAESTYNLTAYCLSDTWIGCDKKVIVKFKVAKRSRAGTRAMIA
D5A855_________________MDEATAVTAASKAIQESLEGSGASVKEINVAVKEAVEKVKSGSRLVMVKFQAPAESTYNLTAYCLSDAWIGCDKKVIVKLKVAKRSRAGTRAMIA

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
201	66		33		0.997452
202	66			33	0.997452
243		66		33	0.997452
244	66		33		0.997452
459		33		66	0.997452
460	33			66	0.997452
626	33			66	0.997452
627	33			66	0.997452
628			66	33	0.997452
630			66	33	0.997452
647	25			75	0.996473
649			25	75	0.996473
695	85			14	0.993533
744	12	87			0.992554
843	14			85	0.993533
844	14	85			0.993533
846		85	14		0.993533
847		85		14	0.993533
1079	16			83	0.994512
1081			83	16	0.994512
1082		83	16		0.994512
1083	83			16	0.994512
1098	83		16		0.994512
1143		20	80		0.995493
1145			80	20	0.995493
1549	16	83			0.994512
1552			16	83	0.994512
1553		83		16	0.994512
1777	87	12			0.992554
1831	11		88		0.923564
1834	88		11		0.923564
1856	75	25			1.0
1857	25		75		1.0
1858			75	25	1.0
1871	16			83	0.994512
1874	83			16	0.994512
1875			83	16	0.994512
1884		20	80		0.995493
1885	20	80			0.995493
1886			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain