SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5723

Length: 374 nt

UniGene Fasta

>biog3_v1.0_unigene5723
GGACTTATCTCACAAATCGCGGCCTGGTTAATTGTCATCGACTGAACTCTTTGCACACGGTTTCCCGCGCAGTTGTCTGCCGGACTTTAGAAGGGCAGTACAGTTTGCTCTATAACAGACGCTGAGGCGGATCTATTCCCTAAATTCTCTCATGTAGGCTTGCCAGAATAGTTCGAGTTCCTCGCGTCTTCCGCTTTAGATAACAGTTTTTCTTGGGGTCTTGACGAGAAAATTTGTGGTTTGAGGGAATGGCGAGTGCGGCAGAGGCCGAGCAAGTTCTGAATACCCCCGGTCAGGGCGCCGAAACTGTACCCGACGAACTTCCGGCTCCTGCAGGCTGGAAGAAGAAGGCTTATTCCAAAGAAGGGTGGGAC

Ace file of the UniGene biog3_v1.0_unigene5723

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17248	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative methyl-binding domain protein [Cryptomeria japonica]	-	-	5.0e-10	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	methyl binding domain protein	-	-	3.71356e-20	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Methyl-CpG DNA binding	IPR001739	-	0.0	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV84

Fln msg: Distance to subject end: 282 aas, your sequence is shorter than subject: 42 - 324

Fln protein: MASAAEAEQVLNTPGQGAETVPDELPAPAGWKKKAYSKEGWD

Protein Length: 43

Fln nts: GGACTTATCTCACAAATCGCGGCCTGGTTAATTGTCATCGACTGAACTCTTTGCACACGGTTTCCCGCGCAGTTGTCTGCCGGACTTTAGAAGGGCAGTACAGTTTGCTCTATAACAGACGCTGAGGCGGATCTATTCCCTAAATTCTCTCATGTAGGCTTGCCAGAATAGTTCGAGTTCCTCGCGTCTTCCGCTTTAGATAACAGTTTTTCTTGGGGTCTTGACGAGAAAATTTGTGGTTTGAGGGA_-_ATGGCGAGTGCGGCAGAGGCCGAGCAAGTTCTGAATACCCCCGGTCAGGGCGCCGAAACTGTACCCGACGAACTTCCGGCTCCTGCAGGCTGGAAGAAGAAGGCTTATTCCAAAGAAGGGTGGGAC

Fln Alignment:

Contig5723___MASAAEAEQVLNTPGQGAETVPDELPAPAGWKKKAYSKEG
A9NV84_________________MASAADAEQVLNSPGQGVETVPEELPAPAGWKKKLLPKKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain