SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5718

Length: 525 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene5718
AATGTAGTTCCATTAGTGGCAGTTTTTCTCATAACTTCAGTCCTAATCTGTATTTGTCGTAGACGTAATGTGGTGACAATCAGGCCATGGAAAACTGGAATAAGTGGCCAACTACAGAAGGTGTTTGTAACAGGTGTTCCAAAACTAAATCGAGTAGATTTAGAAGCGGCATGTGAGGAGTTTAGTAATGTCATTGGTTCCACGCCTGATAGCATGTTATACAAAGGAACACTGTCAAGTGGCATTGAAATTGCTGTAACGGCCACCACAATATCGTCTGCAAAAGATTGGTCGGAGCATTCAGAACTTTATTTCAGGAAGAAGATTGAAGTCCTTGGTCGGATTAACCACAAAAACTTTCTTAATCTTCTTGGCTTCTGTGAGGAGGAGGAGCCATTCCGAAGAAATGATGGTTTTTGAATATGCTCCAAATGGGACACTATTTGAACATCTTCACAATAAAGGAGCTGAACATCTGGACTGGGCGACTCGGATGAGAATTATAATGGGAATAGCATACACATT

Ace file of the UniGene biog3_v1.0_unigene5718 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4307	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9T7R3_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	probable lrr receptor-like serine threonine-protein kinase mrh1-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	73%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3		IPR012335	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMF2

Fln msg: Overlapping hits, possible frame ERROR between 405 and 320, Distance to subject end: 188 aas, your sequence is shorter than subject: 175 - 754

Fln protein: NVVPLVAVFLITSVLICICRRRNVVTIRPWKTGISGQLQKVFVTGVPKLNRVDLEAACEEFSNVIGSTPDSMLYKGTLSSGIEIAVTATTISSAKDWSEHSELYFRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMMVFEYAPNGTLFEHLHNKGAEHLDWATRMRIIMGIAYT

Protein Length: 176

Fln nts: AATGTAGTTCCATTAGTGGCAGTTTTTCTCATAACTTCAGTCCTAATCTGTATTTGTCGTAGACGTAATGTGGTGACAATCAGGCCATGGAAAACTGGAATAAGTGGCCAACTACAGAAGGTGTTTGTAACAGGTGTTCCAAAACTAAATCGAGTAGATTTAGAAGCGGCATGTGAGGAGTTTAGTAATGTCATTGGTTCCACGCCTGATAGCATGTTATACAAAGGAACACTGTCAAGTGGCATTGAAATTGCTGTAACGGCCACCACAATATCGTCTGCAAAAGATTGGTCGGAGCATTCAGAACTTTATTTCAGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATGATGGTTTTTGAATATGCTCCAAATGGGACACTATTTGAACATCTTCACAATAAAGGAGCTGAACATCTGGACTGGGCGACTCGGATGAGAATTATAATGGGAATAGCATACACATT

Fln Alignment:

Contig5718___VPLVAVFLITSVLICICRRRNVVTIRPWKTGISGQLQKVFVTGVPKLNRVDLEAACEEFSNVIGSTPDSMLYKGTLSSGIEIAVTATTISSAKDWSEHSELYFRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMMVFEYAPNGTLFEHLHNKGAEHLDWATRMRIIMGIAY
B8LMF2_________________VPLVAFFLITSVLVCICRRRNVVTIRPWKTGISGQLQKAFVTGVPKLNRVDLEAACEEFSNVIGSTPDSMLYKGTLSSGVEIAVTSTIISSAKDWSEHSELYFRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMMVFEYAPNGTLFEHLHNKGAEHLDWTTRMRIIMGIAY

SSRs (tot: 1)

Start position	End position	Sequence	Length
133	144	CTC CTC CTC CTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain