SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5710

Length: 2607 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene5710
GGACTCTTCTCCGCATATATTTCAAGTCGAACTCACTCGAAGAGGAGGAAGGAATACATCTCCGGGCTTCACAGTCTGACGGGAACAGGAGGAAGGAGCACATCTCCGGGCTTCACAGTCTAAACAATCGAGGTGTATGGTTGGGCGTGCTCTTTTTTAGGGTTGAAGAGTTCTGAAGTCCCGGCAAATTGATTGTAGGCTTAGAGTCAGGGTAGTTGCTTGACAAGAAACAGTGGAAGTGTAGATTAGCGTAGAAGAGTGTTGGGGTTTGCTTATTCTGAGTGGCGATAAGCGATGGAGGAGATTACTGTAAAGCGGGGGCGGGGAAGGCCCCCAAAGCAACACCAGAAAACACCCACTGGAGTCGTCGCTACCCCTAGCGCCCCAGAATTTCATATGCCAAATGCCAACAACAACAATTCAGTAGAGGGCTCCCCCAATGGAGACATTGAGATGTTGGAGAGTATTGTGCCAGGTAGGAGTGGTAGAGGAAGGGGAAGACCAAGGAAACATCCATTGGAAAATGGTTCAGCTCCGGGTTTCGATAAATCCGTTAGTCAAGAAAATATCTCTGGAGTCGATAAGGACCTGAAAAAAATGAAAAGTGAGCGGTCTTTGGAATCTCCTCTACGGAGAAGTTCGCGATATACTTTATCGTCACCTCATACTTTGAGTGATGTAATCAGACAGAATGCGATTACGGATTCGGTGGCCGATGATGTCAAGGGTTCTCCATTCATGAATGCAGTAGTTAAAGTTTTCTGTGTTCATACAGAACCGAATTTTTCACTTCCATGGCAGCGCAAGCGTCAATTTAGCTCGAATAGCAGTGGGTTTATTATTGATGGACGCAGAGTGCTGACAAATGCCCATTCGGTAGAGCACCATACACAAGTGAAGCTCAAGAAGCGAGGATCAGATACAAAGTACTTGGCTACTGTGCTTGCGATTGGCACTGAATGTGATATTGCAATGCTAACTGTGAGCGATGATGAGTTTTGGGAAGGAGTATCTCCAGTGCAATTTGGAGCGCTGCCTACTTTGCAGGATGGTGTCACTGTTGTAGGTTATCCAATTGGTGGTGACACAATCTCAGTGACTAGTGGAGTTGTATCACGCATTGAAGTTCTTTCATATGTCCACGGGGCCACCGAGCTTCTTGGAGTCCAGATTGATGCTGCTATAAATGCTGGAAATTCTGGGGGACCTGCTTTCAATGACAAGGGCCAGTGTGTGGGAATTGCATTTCAATCACTTAAACACGAAGATGCAGAAAATATTGGATATGTTATACCAACTCCGGTTATTACACACTTTATCACGGATTATGAACGCTCGGGAGACTACACAGGATTTTTATCTGCAGGATTTCCCATACTTGGAATAGAATGGCAGAAAATGGAGAATCCTGATTTGCGTATTGCAATGGGAATGATGTCTAACCAGAAAGGTGTTCGTGTAAGAAGGGTAGAACCAACAGCTCCAGCAGCGAAATTCTTGATATCATCAGATATTCTTCTCAGTTTTGATGGAATTGATATTGCTAATGATGGAACTGTTCCTTTCAGGCGTGGTGAGCGCATAGGCTTTAGCTACCTTGTTTCAAAGAAGTACACAGGAGAGCATGCCAGAGTTAAAATTCTACGTGATTCTGAGTATCATGAATTTGATATCGAGCTTTCTACTCACAAACGCCTAGTCCCTGCACATATTAAGGGGAAGCCTCCATCTTATTACATCATAGCTGGCTTTGTATTTTCAGCTCTGTCCGTGCCATACCTTCGTTCTGAATATGGAAAAGATTATGACTATGATGCTCCAGTAAAACTGTTGGACAAGCTACTGCATTCTATGGCACGAACAGAAGATGAACAGTTGGTGGTGATTTCTCAGGTTCTGGTTGCAGATATAAATATTGGTTACGAGGATATTGTAAATACACAGGTCCTGGCTTTCAATGGAGTGCGTGTAAAAAATCTCAGGCATCTTGCAGACATGGTGGAAAACTGTGAGGATGAATTTCTGAGATTTGACCTGGAGTATCAACAGATCGTTGTTTTGGGAACAAAAAAATCGAAGGAAGCAACTCCTGATATTCTTGCAACACATTGCATACCTTCAGCTATATCTGATGACATTTGAAAACGTGAATCAGTTTTCCAGAGGATCTGAATTATCACGGAAATTCACATGCAATTACAGACAAAATGTGGGCTGCATAACTGTTATCGAATCTGCTCCTTTATTCCCTTGCTATGTGGTTTACTTCTTTCTACATTTGTTTTTGAGTCTAGGCCTGGAGCTCTTTGTATCGCTCGATCTATGTTGATAGTGCATGGACCAACACCTTGGCGTTGAATCAATACCTTAATATGGTGTTTATTCATCAGAGTTTTGCAAACTGCTCTTGTATTTTGTAAGCAATAGTCTTACAAAAGATCATACATATGTGGATGGATATTTACATGAAGAATCGTACAATCTGATTTTGCTTAGATTTATGTTTTTTAAATTATACATCACCAAATTTTGAAGAAATTCCAAGCAGTTGGAATCTGTATTGATATTTGGGCGAGACAGAGGTACAATCCCATCTACACATACATT

Ace file of the UniGene biog3_v1.0_unigene5710 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17814	45/47
SustainPine v2.0	sp_v2.0_unigene22055	2/47

Source	Descriptions	Term	Type	Identity
AutoFact	putative DegP2 protease [Oryza sativa Japonica Group]	-	-	83%
FL-Next	sp=Protease Do-like 9; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Blast2go	protease do-like 9-like	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	HMG-I/HMG-Y, DNA-binding, conserved site	IPR000637	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap	IPR001254	-	-
Sma3	PDZ domain	IPR001478	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase S1C, HrtA/DegP2/Q/S	IPR001940	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Peptidase S1B, glutamyl endopeptidase I	IPR008256	-	-
Sma3	Serine endopeptidase DegP2	IPR015724	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FL12

Fln msg:

Fln protein: MEEITVKRGRGRPPKQHQKTPTGVVATPSAPEFHMPNANNNNSVEGSPNGDIEMLESIVPGRSGRGRGRPRKHPLENGSAPGFDKSVSQENISGVDKDLKKMKSERSLESPLRRSSRYTLSSPHTLSDVIRQNAITDSVADDVKGSPFMNAVVKVFCVHTEPNFSLPWQRKRQFSSNSSGFIIDGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVSDDEFWEGVSPVQFGALPTLQDGVTVVGYPIGGDTISVTSGVVSRIEVLSYVHGATELLGVQIDAAINAGNSGGPAFNDKGQCVGIAFQSLKHEDAENIGYVIPTPVITHFITDYERSGDYTGFLSAGFPILGIEWQKMENPDLRIAMGMMSNQKGVRVRRVEPTAPAAKFLISSDILLSFDGIDIANDGTVPFRRGERIGFSYLVSKKYTGEHARVKILRDSEYHEFDIELSTHKRLVPAHIKGKPPSYYIIAGFVFSALSVPYLRSEYGKDYDYDAPVKLLDKLLHSMARTEDEQLVVISQVLVADINIGYEDIVNTQVLAFNGVRVKNLRHLADMVENCEDEFLRFDLEYQQIVVLGTKKSKEATPDILATHCIPSAISDDI*

Protein Length: 617

Fln nts: GGACTCTTCTCCGCATATATTTCAAGTCGAACTCACTCGAAGAGGAGGAAGGAATACATCTCCGGGCTTCACAGTCTGACGGGAACAGGAGGAAGGAGCACATCTCCGGGCTTCACAGTCTAAACAATCGAGGTGTATGGTTGGGCGTGCTCTTTTTTAGGGTTGAAGAGTTCTGAAGTCCCGGCAAATTGATTGTAGGCTTAGAGTCAGGGTAGTTGCTTGACAAGAAACAGTGGAAGTGTAGATTAGCGTAGAAGAGTGTTGGGGTTTGCTTATTCTGAGTGGCGATAAGCG_-_ATGGAGGAGATTACTGTAAAGCGGGGGCGGGGAAGGCCCCCAAAGCAACACCAGAAAACACCCACTGGAGTCGTCGCTACCCCTAGCGCCCCAGAATTTCATATGCCAAATGCCAACAACAACAATTCAGTAGAGGGCTCCCCCAATGGAGACATTGAGATGTTGGAGAGTATTGTGCCAGGTAGGAGTGGTAGAGGAAGGGGAAGACCAAGGAAACATCCATTGGAAAATGGTTCAGCTCCGGGTTTCGATAAATCCGTTAGTCAAGAAAATATCTCTGGAGTCGATAAGGACCTGAAAAAAATGAAAAGTGAGCGGTCTTTGGAATCTCCTCTACGGAGAAGTTCGCGATATACTTTATCGTCACCTCATACTTTGAGTGATGTAATCAGACAGAATGCGATTACGGATTCGGTGGCCGATGATGTCAAGGGTTCTCCATTCATGAATGCAGTAGTTAAAGTTTTCTGTGTTCATACAGAACCGAATTTTTCACTTCCATGGCAGCGCAAGCGTCAATTTAGCTCGAATAGCAGTGGGTTTATTATTGATGGACGCAGAGTGCTGACAAATGCCCATTCGGTAGAGCACCATACACAAGTGAAGCTCAAGAAGCGAGGATCAGATACAAAGTACTTGGCTACTGTGCTTGCGATTGGCACTGAATGTGATATTGCAATGCTAACTGTGAGCGATGATGAGTTTTGGGAAGGAGTATCTCCAGTGCAATTTGGAGCGCTGCCTACTTTGCAGGATGGTGTCACTGTTGTAGGTTATCCAATTGGTGGTGACACAATCTCAGTGACTAGTGGAGTTGTATCACGCATTGAAGTTCTTTCATATGTCCACGGGGCCACCGAGCTTCTTGGAGTCCAGATTGATGCTGCTATAAATGCTGGAAATTCTGGGGGACCTGCTTTCAATGACAAGGGCCAGTGTGTGGGAATTGCATTTCAATCACTTAAACACGAAGATGCAGAAAATATTGGATATGTTATACCAACTCCGGTTATTACACACTTTATCACGGATTATGAACGCTCGGGAGACTACACAGGATTTTTATCTGCAGGATTTCCCATACTTGGAATAGAATGGCAGAAAATGGAGAATCCTGATTTGCGTATTGCAATGGGAATGATGTCTAACCAGAAAGGTGTTCGTGTAAGAAGGGTAGAACCAACAGCTCCAGCAGCGAAATTCTTGATATCATCAGATATTCTTCTCAGTTTTGATGGAATTGATATTGCTAATGATGGAACTGTTCCTTTCAGGCGTGGTGAGCGCATAGGCTTTAGCTACCTTGTTTCAAAGAAGTACACAGGAGAGCATGCCAGAGTTAAAATTCTACGTGATTCTGAGTATCATGAATTTGATATCGAGCTTTCTACTCACAAACGCCTAGTCCCTGCACATATTAAGGGGAAGCCTCCATCTTATTACATCATAGCTGGCTTTGTATTTTCAGCTCTGTCCGTGCCATACCTTCGTTCTGAATATGGAAAAGATTATGACTATGATGCTCCAGTAAAACTGTTGGACAAGCTACTGCATTCTATGGCACGAACAGAAGATGAACAGTTGGTGGTGATTTCTCAGGTTCTGGTTGCAGATATAAATATTGGTTACGAGGATATTGTAAATACACAGGTCCTGGCTTTCAATGGAGTGCGTGTAAAAAATCTCAGGCATCTTGCAGACATGGTGGAAAACTGTGAGGATGAATTTCTGAGATTTGACCTGGAGTATCAACAGATCGTTGTTTTGGGAACAAAAAAATCGAAGGAAGCAACTCCTGATATTCTTGCAACACATTGCATACCTTCAGCTATATCTGATGACATTTGA___AAACGTGAATCAGTTTTCCAGAGGATCTGAATTATCACGGAAATTCACATGCAATTACAGACAAAATGTGGGCTGCATAACTGTTATCGAATCTGCTCCTTTATTCCCTTGCTATGTGGTTTACTTCTTTCTACATTTGTTTTTGAGTCTAGGCCTGGAGCTCTTTGTATCGCTCGATCTATGTTGATAGTGCATGGACCAACACCTTGGCGTTGAATCAATACCTTAATATGGTGTTTATTCATCAGAGTTTTGCAAACTGCTCTTGTATTTTGTAAGCAATAGTCTTACAAAAGATCATACATATGTGGATGGATATTTACATGAAGAATCGTACAATCTGATTTTGCTTAGATTTATGTTTTTTAAATTATACATCACCAAATTTTGAAGAAATTCCAAGCAGTTGGAATCTGTATTGATATTTGGGCGAGACAGAGGTACAATCCCATCTACACATACATT

Fln Alignment:

Contig5710___VKGSPFMNAVVKVFCVHTEPNFSLPWQRKRQFSSNSSGFIIDGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVSDDEFWEGVSPVQFGALPTLQDGVTVVGYPIGGDTISVTSGVVSRIEVLSYVHGATELLGVQIDAAINAGNSGGPAFNDKGQCVGIAFQSLKHEDAENIGYVIPTPVITHFITDYERSGDYTGFLSAGFPILGIEWQKMENPDLRIAMGMMSNQKGVRVRRVEPTAPAAKFLISSDILLSFDGIDIANDGTVPFRRGERIGFSYLVSKKYTGEHARVKILRDSEYHEFDIELSTHKRLVPAHIKGKPPSYYIIAGFVFSALSVPYLRSEYGKDYDYDAPVKLLDKLLHSMARTEDEQLVVISQVLVADINIGYEDIVNTQVLAFNGVRVKNLRHLADMVENCEDEFLRFDLEYQQIVVLGTKKSKEATPDILATHCIPSAISDDI
Q9FL12_________________VKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSSGFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVTDDEFWEGVSPVEFGDLPALQDAVTVVGYPIGGDTISVTSGVVSRMEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDAENIGYVIPTPVIVHFIQDYEKHDKYTGF-----PVLGIEWQKMENPDLRKSMGMESHQKGVRIRRIEPTAPESQVLKPSDIILSFDGVNIANDGTVPFRHGERIGFSYLISQKYTGDSALVKVLRNKEILEFNIKLAIHKRLIPAHISGKPPSYFIVAGFVFTTVSVPYLRSEYGKEYEFDAPVKLLEKHLHAMAQSVDEQLVVVSQVLVSDINIGYEEIVNTQVVAFNGKPVKNLKGLAGMVENCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCIPSAMSDDL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
645		85		14	0.993533
686	33		66		1.0
710		80	20		0.995493
713	20		80		0.995493
714	80			20	0.995493
716		80		20	0.995493
724	80			20	0.995493
1369		66		33	0.997452
1518			83	16	0.994512
1536		83		16	0.994512
1538	83		16		0.994512
1566		83	16		0.994512
1680			66	33	0.997452
2376		87		12	0.992554
2415	14			85	0.993533
2416		85		14	0.993533
2528	20			80	0.995493
2530	20	80			0.995493
2532		80		20	0.995493
2555			66	33	0.997452
2556		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2189	2200	TTG TTG TTG TTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain