SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5684

Length: 1010 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5684 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene763	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Adenylate kinase family protein n=3 Tax=Arabidopsis RepID=Q8VYL1_ARATH	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	63%
Blast2go	adenylate kinase family protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylate kinase.	EC:2.7.4.3	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide phosphorylation	GO:0046939	Biological Process	78%
Blast2go	nucleotide biosynthetic process	GO:0009165	Biological Process	78%
Blast2go	adenylate kinase activity	GO:0004017	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	78%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Adenylate kinase	IPR000850	-	0.0	-
Sma3	Adenylate kinase, subfamily	IPR006259	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: F6HCJ8

Fln msg: Overlapping hits, possible frame ERROR between 528 and 507, and possible frame ERROR between 698 and 701, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 337 - 597

Fln protein: NVKEQVFEDIDTILAKLLEQELMDTRSLVHSNDHLLPAKDGSMSDDRFRSKSNWKGIPTKLNNIPHSREIREYFYEDVRCATIRAVEDGCTRLKIEINIPELNPDMDVYRIGTLMELIRVIALTFADDGKRVKVCVQGSMGEGVLVGMPLQLAGTRNILEFMDWGDYDxxxxxxxxxSIGAKEVTDQDDMFILLAPQNAVGNCIIDDLQAMSEAAGSRPVILVNPRLKDMPSxxGVMQTIGRDKRMEFAASFSNCYYFRLLYKVGTQYPIVGALRMCYPYPYDLYKRIDTEYGKEKYVSIATFTEKPTSEQINDAFSGRLRKKESTPTGLWGLLSGH

Protein Length: 338

Fln nts: AATGTTAAAGAGCAAGTGTTTGAGGATATTGATACAATCTTGGCAAAATTGCTTGAACAAGAATTGATGGATACCAGGTCTTTAGTTCATAGTAACGATCATTTGCTTCCAGCCAAAGACGGATCTATGAGTGATGACAGATTTAGAAGCAAGAGTAACTGGAAAGGAATTCCTACAAAGTTGAACAACATTCCTCATTCCAGAGAGATACGAGAATATTTCTACGAGGATGTGCGTTGTGCCACAATAAGGGCTGTAGAAGATGGCTGTACCAGATTAAAGATTGAAATAAATATCCCAGAGTTGAACCCTGACATGGATGTGTACAGAATTGGCACACTGATGGAGCTTATACGAGTAATTGCTCTCACTTTTGCTGATGATGGGAAGCGTGTAAAGGTATGTGTTCAGGGCTCCATGGGTGAAGGTGTGCTGGTTGGAATGCCACTGCAATTGGCTGGAACTAGGAATATATTGGAATTCATGGACTGGGGTGATTATGATxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCATAGGTGCCAAAGAAGTCACTGACCAAGATGACATGTTCATTTTACTGGCCCCTCAAAATGCTGTGGGCAACTGTATTATTGATGACTTGCAAGCCATGTCTGAAGCAGCTGGTTCTCGACCTGTGATACTTGTTAATCCTCGTCTCAAGGACATGCCAAGTTxxxGGGGAGTGATGCAAACTATAGGAAGAGATAAGAGGATGGAATTCGCAGCATCTTTTTCAAATTGCTACTACTTCCGGCTGCTTTATAAAGTAGGCACCCAATACCCAATAGTGGGTGCTTTAAGAATGTGTTATCCATATCCTTATGATCTTTACAAAAGGATTGATACTGAATATGGGAAGGAGAAGTATGTGAGTATTGCAACATTCACTGAAAAGCCAACATCAGAACAAATAAATGATGCCTTTAGTGGCAGATTAAGGAAGAAAGAAAGTACACCTACAGGATTATGGGGCCTTTTGAGTGGACATT

Fln Alignment:

Contig5684___KEQVFEDIDTILAKLLE--QELMDTRSLVHSNDHLLPAKDGSMSDDRFRSKSNWKGIPTKLNNIPHSREIREYFYEDVRCATIRAVEDGCTRLKIEINIPELNPDMDVYRIGTLMELIRVIALTFADDGKRVKVCVQGSMGEGVLVGMPLQLAGTRNILEFMDWGDYDAxxxxxxxGSIGAKEVTDQDDMFILLAPQNAVGNCIIDDLQAMSEAAGSRPVILVNPRLKDMPSSxGVMQTIGRDKRMEFAASFSNCYYFRLLYKVGTQYPIVGALRMCYPYPYDLYKRIDTEYGKEKYVSIATFTEKPTSEQINDAFSGRLRKKESTPTGLWGLLSG
F6HCJ8_________________KDEVFKPIDSLLSKMQQDKENMMKLEKSIRASERL--------SNLASSSQENWRGIPTRLNNIPHSREIRTYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVLALSFADDGKHVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAxxxxxxxGSIGSKEVEEQDDLFILVAPQNAVGNCIIDDLKAMTDAAGNRPVILVNPRLKDLPGSxGIMQTMGRDKRLEYAASFENCYFFRLLYYAGTQYPIMGAIRMSYPYRYELYKRVDESFGKEKYIILSTSSARPNIDEINDAFLGKPRSEAKKATGFWGFLSG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
668	16			83	0.994512
669	16	66	16		0.988813
670	66			33	1.0
700			83	16	0.994512
766	20		80		0.995493
767		20		80	0.995493
768	20		80		0.995493
769			80	20	0.995493
770		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain