SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5679

Length: 1379 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5679

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18268	5/37
SustainPine v2.0	sp_v2.0_unigene21975	22/37
SustainPine v2.0	sp_v2.0_unigene27802	10/37

Source	Descriptions	Term	Type	e value	Identity
AutoFact	monothiol glutaredoxin-S15 [Arabidopsis thaliana] ref\|NP_001030704.1\| monothiol glutaredoxin-S15 [Arabidopsis thaliana] sp\|Q8LBK6.2\|GRS15_ARATH RecName: Full=Monothiol glutaredoxin-S15, mitochondrial; Short=AtGrxS15; Flags: Precursor dbj\|BAB02297.1\| unnam	-	-	5.60519e-45	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	monothiol glutaredoxin-s15	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Monothiol glutaredoxin-related	IPR004480	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK7

Fln msg:

Fln protein: MAGAMAHQILQRALRLQSASSVAGARVLYGLSGQKRFSTIGEDPDTHSDFKAVNKAPKDVPSARELVEKDIEQNRIMLYMKGVPSAPRCGFSALAVKVLQEYDVPFSARNILEDQELKESIKSFSNWPTFPQIFIKGEFVGGSDIILNMHQSGELKEMLKDLIPPSK*

Protein Length: 169

Fln nts: CTCTAAGATTCGAGCACCGCCAGCTCCCTCGCTTTGGTGATCTAGCTCGCTCGAGCTGCTTGCTCTGGCTTTGGGTTACCTCTTTCACTCCTGCTTGTACTGCTGGTTCTTCCGATAAGGGTTAACAGGTCTTGAACTCTTCCAATCAGGCTAATAGGTTCCTGAACAACTCCTCCAGTTGCACAGAGGAAAGTTCTGCAACCGTTTGGGCGTCATAGGGCTCCTGAGAAACCCGCGGTGATAAGGTGTTTTGGTTGCTATAAAATCAGGATTATCGAATAATTATTTTCAGTAAGCAC_-_ATGGCTGGGGCAATGGCTCATCAGATCCTGCAGAGAGCCCTGAGATTACAATCAGCTTCTTCAGTTGCAGGAGCCAGGGTATTGTATGGGTTGAGTGGACAAAAGAGGTTCTCAACTATTGGAGAAGATCCTGACACTCATAGTGATTTCAAAGCTGTAAATAAGGCCCCAAAGGATGTTCCCTCAGCACGTGAGTTGGTGGAGAAGGATATTGAACAAAATCGTATAATGCTATATATGAAAGGAGTTCCATCTGCTCCTCGCTGTGGCTTCAGTGCCTTAGCTGTCAAAGTGCTGCAAGAATATGATGTTCCATTTAGTGCAAGAAATATATTGGAGGATCAAGAGCTCAAAGAAAGCATTAAATCTTTCAGCAATTGGCCCACCTTTCCCCAGATCTTTATAAAAGGGGAGTTTGTTGGAGGCTCTGATATTATCTTAAACATGCATCAGTCTGGTGAACTAAAGGAAATGTTGAAGGATCTGATACCACCCAGTAAGTAG___AGGGTCAGGCATGTTTCTTGTGGGCTCTGGAATGCGTTATGTTGCATTCTATATTACAATTACTCCATGTTTAATAAGTTATCTAAGCTGAGGTTGTAGGAACGTGTTGATTATGCATCTTATCTAATGGGATGGTTCTTAAGAATTGTTGTATTTAACTTAACAATTTATGATGTTTATCTTGTTGTTAGCCTTCGATATTGTAATATGTTATGTTTCCATTTGATATTTTATTCTGCCCCTAAGTATTGTAGTGAAATACAAAGGTGTCTTGACATCTGGACAGTACTTTTACATCGATTAGTTCGTATTTTAAAGTTGACACACAATATGAAAGGGAAGCCTGCTACTAATAAAATAGATTTCCTAGTCTCATCCTTGCAGAGGTCTGGACATGGAATACCTTGTATTGTATTCAATAACAATGATTGTTAAAGGTCTCAAAGGATTCATATTCAATAAGACGAGAGCATGTAGACCAGGAAGGTCTCAAAGGATTGTTAAAGATGAACATAAACGTTGAAGCTCCAGGGTTTATATATTCACATTGCACTAAAAATTATGCCTAGTGACATT

Fln Alignment:

Contig5679___MAGAMAHQILQRALRLQSASSVAGARVLYGLSGQKRFSTIGEDPDTHSDFKAVNKAPKDVPSARELVEKDIEQNRIMLYMKGVPSAPRCGFSALAVKVLQEYDVPFSARNILEDQELKESIKSFSNWPTFPQIFIKGEFVGGSDIILNMHQSGELKEMLKDLIPPSK
A9NWK7_________________MAGAMAHQILQRALRLQSASSASGVRVLYGLSGQKRFSTIGEDPDTHSDFQAVNKAPKDVPSARELVEKDIKNNHIMLYMKGVPAAPRCGFSALAVKVLQEYDVPFSARNILEDQELKESIKSFSNWPTFPQIFIKGEFVGGSDIILNMHQSGELKETLKDLLPLNK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1220		11		88	0.923564
1326	20		80		0.995493
1341		25	75		0.996473
1342	25			75	0.996473
1351	33			66	0.997452
1352	33			66	0.997452
1353	33	66			0.997452
1356	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain