SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5661

Length: 334 nt

UniGene Fasta

>biog3_v1.0_unigene5661
AATGTCGAAATTGCATTGGAGGAGGCGTTGAGGATAAAGGAATCAGGGAATGCATCGGAGGTTGTGGTTGTTAGCATGGGAGGTTCACAGTGTGCAGAGACACTGAGAACTGGCTTGGCAATGGGCGCTGACAGAGCTATCCATGTCGCCACAGAAACGAGTCTTTATCCTCTTGCTGTGGCTAAACTTCTTCAATCCTTGGTTGCCACTGAACAGCCTGGCCTTGTCATGCTTGGAAAACAGGCCATAGATGATGACTGCAATCAAACAGGACAAATGGTTGCTGGTCTGCTAAAATGGCCACAAGGCACCTTTGCATCAAAGGTGGTACATT

Ace file of the UniGene biog3_v1.0_unigene5661

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene488	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	electron transfer flavoprotein beta-subunit-like [Arabidopsis thaliana]	-	-	78%
FL-Next	Isoform 2 of Electron transfer flavoprotein subunit beta, mitochondrial OS=Arabidopsis thaliana GN=ETFB	-	-	73%
Blast2go	electron transfer flavoprotein subunit beta	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	chlorophyll catabolic process	GO:0015996	Biological Process	87%
Blast2go	leucine catabolic process	GO:0006552	Biological Process	87%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Electron transfer flavoprotein, alpha/beta-subunit, N-terminal	IPR014730	-	-
Sma3	Electron transfer flavoprotein, beta subunit	IPR012255	-	-
Sma3	Electron transfer flavoprotein, beta-subunit, conserved site	IPR000049	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LSW8-2

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 111 - 178

Fln protein: NVEIALEEALRIKESGNASEVVVVSMGGSQCAETLRTGLAMGADRAIHVATETSLYPLAVAKLLQSLVATEQPGLVMLGKQAIDDDCNQTGQMVAGLLKWPQGTFASKVVH

Protein Length: 112

Fln nts: AATGTCGAAATTGCATTGGAGGAGGCGTTGAGGATAAAGGAATCAGGGAATGCATCGGAGGTTGTGGTTGTTAGCATGGGAGGTTCACAGTGTGCAGAGACACTGAGAACTGGCTTGGCAATGGGCGCTGACAGAGCTATCCATGTCGCCACAGAAACGAGTCTTTATCCTCTTGCTGTGGCTAAACTTCTTCAATCCTTGGTTGCCACTGAACAGCCTGGCCTTGTCATGCTTGGAAAACAGGCCATAGATGATGACTGCAATCAAACAGGACAAATGGTTGCTGGTCTGCTAAAATGGCCACAAGGCACCTTTGCATCAAAGGTGGTACATT

Fln Alignment:

Contig5661___EIALEEALRIKESGNASEVVVVSMGGSQCAETLRTGLAMGADRAIHVATETSLYPLAVAKLLQSLVATEQPGLVMLGKQAIDDDCNQTGQMVAGLLKWPQGTFASKVV
Q9LSW8-2_______________EIALEEALRIKEAGFAKEVIAVSIGPSQCVDTLRTGLAMGADRGIHVETNSIFLPLTIAKILKSLADVENPGLIFLGKQAIDDDCNQTGQMVAALLGWPQATFASKVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain