SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5644

Length: 758 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5644 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene426	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	D1 protease-like protein precursor [Triticum aestivum]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	carboxyl-terminal-processing protease	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	81%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	81%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	81%
Blast2go	intracellular signal transduction	GO:0035556	Biological Process	81%

Source	InterPros	Term	Type	Identity
Sma3	PDZ domain	IPR001478	-	-
Sma3	Interphotoreceptor retinol-binding	IPR005151	-	-
Sma3	Peptidase S41A, C-terminal peptidase	IPR004447	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
229	80			20	0.995493
286	25		75		0.996473
287		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain