SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5642

Length: 1096 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5642

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8409	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	Valyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9SWL0_RICCO	-	-	69%
FL-Next	sp=Valyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	valyl trna synthetase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Valine--tRNA ligase.	EC:6.1.1.9	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Valine, leucine and isoleucine biosynthesis	00290		0.0	79%
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	valyl-tRNA aminoacylation	GO:0006438	Biological Process	79%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	79%
Blast2go	valine-tRNA ligase activity	GO:0004832	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ia	IPR002300	-	-
Sma3	Valyl-tRNA synthetase	IPR002303	-	-
Sma3	Valyl-tRNA synthetase, class Ia, C-terminal	IPR011321	-	-
Sma3	Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding	IPR013155	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3		IPR019754	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P93736

Fln msg: Distance to subject end: 342 aas, your sequence is shorter than subject: 365 - 1108

Fln protein: FNRRKLPIICDAELVDPNFGTGAVKITPAHDPNDFLVGKRHNLEFINIFSDDGMINSNGGKEFEGLKRFDARVTVIEALKSKGLYRGAENNEMRLGTCSRSDDIVEPMVKPQWFVNCSDMGREACEAVEDGRLEIIPKQFEADWFRWMRNIRDWCISRQLWWGHRVPAWYVTLEDDDLKEFGVYVDHWVVGRNEVEALTEAGTKFPGKKYHIEQDPDVLDTWFSSGLFPFSVMCWPEDTIDMKTFYPTSLLETGHDIIFFWVARMVMLGMKLTGEVPFKQVYLHPMVRDAHGRKMSKSLGNVIDPLEVINGITLEDLHKRLEQGNLDRNELDIAKAGQKQDFPNGIAERRDRCPPFFSCGLHCSV

Protein Length: 366

Fln nts: TTTCAACAGAAGAAAACTTCCTATCATCTGTGATGCAGAGCTTGTTGATCCAAACTTTGGAACTGGTGCTGTTAAGATTACTCCAGCTCATGATCCAAATGATTTTCTTGTGGGGAAGCGCCACAATTTAGAATTCATTAATATATTTAGCGATGACGGTATGATCAATAGCAATGGGGGGAAGGAATTTGAAGGATTGAAGCGCTTTGATGCTCGTGTTACTGTGATTGAAGCTTTGAAAAGCAAGGGCCTTTACAGAGGTGCTGAAAACAATGAGATGCGCCTGGGCACATGTTCTCGAAGTGATGATATTGTAGAACCAATGGTAAAGCCACAATGGTTCGTCAACTGCTCTGATATGGGAAGAGAAGCCTGTGAAGCTGTGGAAGATGGTAGACTTGAGATTATTCCAAAGCAGTTTGAAGCTGATTGGTTCAGATGGATGAGGAACATTCGAGATTGGTGTATATCAAGGCAACTATGGTGGGGTCATCGTGTTCCAGCATGGTATGTCACATTGGAGGATGATGACCTTAAAGAGTTTGGAGTATATGTTGATCACTGGGTAGTTGGAAGAAATGAGGTAGAAGCTCTTACTGAAGCAGGCACCAAATTTCCTGGCAAGAAATATCACATTGAACAAGATCCAGATGTGCTAGACACATGGTTCTCTTCTGGTCTCTTTCCTTTTTCAGTAATGTGTTGGCCTGAAGATACCATCGATATGAAGACCTTTTATCCAACATCACTGCTTGAAACAGGACATGATATTATTTTCTTCTGGGTAGCACGCATGGTAATGCTAGGAATGAAACTTACAGGAGAAGTTCCTTTTAAGCAGGTTTATTTGCATCCAATGGTACGTGATGCACATGGTCGTAAAATGTCCAAGTCATTAGGCAATGTGATTGATCCTTTGGAAGTCATAAACGGTATAACATTGGAGGATCTGCATAAGAGGCTGGAGCAGGGTAATTTAGATAGAAATGAACTTGACATTGCAAAAGCAGGACAAAAGCAAGACTTTCCAAATGGCATAGCAGAGCGTAGGGACAGATGCCCTCCGTTTTTCTCTTGTGGCCTACACTGCTCAGTC

Fln Alignment:

Contig5642___FNRRKLPIICDAELVDPNFGTGAVKITPAHDPNDFLVGKRHNLEFINIFSDDGMINSNGGKEFEGLKRFDARVTVIEALKSKGLYRGAENNEMRLGTCSRSDDIVEPMVKPQWFVNCSDMGREACEAV---EDGRLEIIPKQFEADWFRWMRNIRDWCISRQLWWGHRVPAWYVTLEDDDLKEFGVYVDHWVVGRNEVEALTEAGTKFPGKKYHIEQDPDVLDTWFSSGLFPFSVMCWPEDTIDMKTFYPTSLLETGHDIIFFWVARMVMLGMKLTGEVPFKQVYLHPMVRDAHGRKMSKSLGNVIDPLEVINGITLEDLHKRLEQGNLDRNELDIAKAGQKQDFPNGIAE
P93736_________________FNGRKLPIICDGILVDPNFGTGCVKITPAHDPNDCEVGKRHKLEFINIFTDDGKINTNGGSDFAGMPRFAAREAVVEALQKQGLYRGAKNNEMRLGLCSRTNDVIEPMIKPQWYVNCSMIGKEALDVAITDENKKLEFVPKQYTAEWRRWLENIRDWCISRQLWWGHRIPAWYATLEEDQLKEVGAYSDHWVVARTEDDAREEAAQKFLGKKFELTRDPDVLDTWFSSGLFPLSVLGWPDVTDDFKAFYPTSVLETGHDILFFWVARMVMMGMKLGGEVPFSKVYFHPMIRDAHGRKMSKSLGNVIDPLEVINGVTLEGLHKRLEEGNLDPKEVIVAKEGQVKDFPNGIPE

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
28	33		33		0.997753
29	33	33		33	0.997753
121		75		25	0.996473
122	25		75		0.996473
215	14	85			0.993533
216	14			85	0.993533
217		85		14	0.993533
354		71		28	1.0
464	16		83		0.994512
465		16	83		0.994512
466	16			83	0.994512
467			83	16	0.994512
492	20			80	0.995493
496		80		20	0.995493
503	20	80			0.995493
527	20		80		0.995493
528		20	80		0.995493
531			75	25	0.996473
536	25	75			0.996473
537		75		25	0.996473
538			25	75	0.996473
551	75		25		0.996473
601		66	33		0.997452
605	66		33		0.997452
667	33	66			0.997452
671			66	33	0.997452
717	33		66		0.997452
737		66		33	0.997452
752	66	33			0.997452
855	20	80			0.995493
858		80	20		0.995493
859		80		20	0.995493
924	20		80		0.995493
925	80	20			0.995493
927			80	20	0.995493
968	25		75		0.996473
969		25	75		0.996473
971			75	25	0.996473
972		75		25	0.996473
1009	66	33			0.997452
1011			66	33	0.997452
1012		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain